Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   3.9  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   6.8  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   9.0  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    25   9.0  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 118 PARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGT 237
           P  S++  +T+PA      +PST   T+  AT++ + S +
Sbjct: 233 PTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSAS 272


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 251  PVLQEDT-SPVSPVTDKEDDSR 313
            P+L  +  SPVSPV D  +DSR
Sbjct: 1063 PLLHSNLHSPVSPVVDSNEDSR 1084


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 85   GTRAHAARTYAPARS-SARQSTAPAAACHARRPSTSA 192
            GT    A ++  A S +  + TAPAA+  A  P+TSA
Sbjct: 927  GTSNKPAFSFGSATSKTTSEGTAPAASASAPAPTTSA 963


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 287 VTDKEDDSRKDGPSPELENGGDRKGDS 367
           + D EDD   D PSP ++     KG S
Sbjct: 101 IEDTEDDMFADSPSPSVKRQNTGKGIS 127


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 304 VFFIGHGRNRRSIFLQNGRNRGVYQSRDESGL 209
           V  I + RN+R I  Q  R +G+Y+S D +GL
Sbjct: 100 VKLIINNRNKRKINRQKSRLQGLYRS-DANGL 130


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 286 GRNRRSIF-LQNGRNRGVYQSRDES 215
           G N+R+ + +  GRN G+Y + DE+
Sbjct: 2   GGNKRAYYAVARGRNTGIYSTWDEA 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,902
Number of Sequences: 5004
Number of extensions: 24771
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)