Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0446 - 3371829-3372132,3374691-3375673 31 0.42
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349... 31 0.42
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 31 0.74
12_02_1009 + 25268666-25269295 30 1.3
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 30 1.3
01_06_0044 - 25922298-25923434 29 1.7
06_03_0969 - 26413534-26413594,26415020-26415318 29 2.3
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 29 2.3
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 29 2.3
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 29 2.3
05_02_0006 - 5541290-5541961 29 3.0
03_05_0267 - 22538631-22539452 29 3.0
11_01_0098 - 724413-724449,725200-725690 28 4.0
07_03_1330 + 25848372-25849157 28 4.0
06_01_0096 - 794148-794246,795682-796975,798960-799417 28 5.2
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867... 28 5.2
03_01_0186 + 1491202-1491210,1491401-1491476,1491573-1492075 28 5.2
10_02_0099 - 5295513-5296400 27 6.9
04_01_0406 - 5345149-5345935,5346302-5346339 27 6.9
03_03_0217 + 15500943-15502196 27 6.9
09_04_0249 + 16070331-16070828 27 9.1
02_05_0686 - 30900748-30902167,30903442-30904742 27 9.1
02_02_0343 + 9163976-9165220 27 9.1
01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694... 27 9.1
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +1
Query: 82 TGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSA 192
TGT+ A T A RSSA Q + A C RRP++SA
Sbjct: 391 TGTQRSRAAT-AAVRSSAIQRSKATAVCTRRRPTSSA 426
>03_01_0455 +
3487354-3488090,3489172-3489255,3489942-3490554,
3491356-3491583,3492270-3492437,3492828-3494587,
3494667-3494670
Length = 1197
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 103 ARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATR----SRRDSGT 237
ART P S A ST PAAA +RP A + R +RD GT
Sbjct: 38 ARTMPPPSSQAATSTPPAAATPLQRPPAQATAQPSTQRYYVGVQRDKGT 86
>07_03_1003 +
23239829-23240121,23240257-23240349,23240785-23240993,
23241585-23241729,23241809-23241881,23242165-23242311,
23242411-23242536,23242653-23242712
Length = 381
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 88 TRAHAARTYAPARSSARQSTAPAA-ACHARRPSTSARTSHNATRSRRDSG 234
T AAR SAR+ TAP+A A A P++SAR + R+R SG
Sbjct: 3 TSGAAARPPVATTLSARRGTAPSATAAAASCPASSARRTTWRPRARLSSG 52
>12_02_1009 + 25268666-25269295
Length = 209
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 70 CRVCTGT---RAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTR 240
CR +G A AAR A ++AR S A+ + PS+S+ + A + R G R
Sbjct: 71 CRAASGAGKVAALAARLAAANATAARASVEAASRALEQNPSSSSNGTAAAAAAARRQGMR 130
Query: 241 LC 246
C
Sbjct: 131 SC 132
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 233 VHASVTPVLQEDTSPVSPVTDKEDDSRKDGPSPELENGGDRKG 361
V AS P ++ DTS VT E+ + K+ P+ E +KG
Sbjct: 260 VEASAWPAVESDTSEFEFVTSDEEAADKEAPAAEPAKTKGKKG 302
>01_06_0044 - 25922298-25923434
Length = 378
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +3
Query: 6 ESRNLAACPCRLSLIFHRIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLH 185
++ A+ L+L+ G + C PYL + + R RCR+ +
Sbjct: 90 DTAGAASIATSLALVPPATPINHGANHSACIFGPYLPLSSRRSLIVLRRRCRVIGHQD-Y 148
Query: 186 LSPYITQCNPLSSRLWYTP 242
L +T CNP+S W P
Sbjct: 149 LHSGLTVCNPVSGERWVLP 167
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +1
Query: 91 RAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATR 216
R+ AAR A RS A +PAAA R T AR A R
Sbjct: 37 RSRAARATARWRSRAAAQGSPAAAARRRSRGTQARRPPAAAR 78
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 100 AARTYAPARSSARQSTAP---AAACHARRPSTSARTSHNATRSRR 225
AA +Y PA S+A S P AA H R P + + RSRR
Sbjct: 347 AAPSYPPATSAASSSVQPFHAEAAAHLRHPRHVSVGGSGSARSRR 391
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 121 ARSSARQSTAPAAACHARRPSTSARTSHNATRSRRD 228
A SA QST +A+ RR STS H ++ SR +
Sbjct: 2049 ASGSAAQSTKQSASGQKRRSSTSEAEQHGSSTSRHN 2084
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 82 TGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDS 231
TG A R APAR++ + AP+ + H P+ +A ++H+ + +S
Sbjct: 1002 TGRNATPDRWAAPARTTNSFNAAPSNSNHVTYPNQNAYSNHSTQATTYNS 1051
>05_02_0006 - 5541290-5541961
Length = 223
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 115 APARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRL 243
+P S++R S PAA+ RP++SA H+ R+R D GT L
Sbjct: 138 SPGSSASRSS--PAAS--QGRPTSSAVPPHSLARARVDKGTDL 176
>03_05_0267 - 22538631-22539452
Length = 273
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 79 CTGTRAHAARTYAPARSSARQSTAPAAACHARRPSTS 189
C+ + A+ + +PAR+S S++P+ C ARRP+ S
Sbjct: 183 CSPSSPPASPSPSPARTSP-PSSSPSRGCSARRPTPS 218
>11_01_0098 - 724413-724449,725200-725690
Length = 175
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 88 TRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCY 249
T++ AAR S A + P A C STSA S + SRR +G R+ +
Sbjct: 115 TQSSAARMTTMLASKAPELPLPPACCMEAGVSTSAGAS-TTSPSRRMAGCRMIF 167
>07_03_1330 + 25848372-25849157
Length = 261
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 118 PARSSARQSTAPAAACHARRPSTSARTSHNATRSRR 225
PA +SA ST+ + + PSTS SH+ATR R
Sbjct: 222 PANTSATASTSRPSTSTSS-PSTSTSASHSATRRGR 256
>06_01_0096 - 794148-794246,795682-796975,798960-799417
Length = 616
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
Frame = -2
Query: 334 LWTRSIFSGIVFFIG--HG 284
LW SIFSG+++FIG HG
Sbjct: 311 LWVVSIFSGLIWFIGICHG 329
>03_02_0463 -
8673313-8673639,8674040-8674126,8674710-8674790,
8674896-8675048,8675129-8675185,8675293-8675569,
8675634-8675749,8676372-8676523,8676627-8676816,
8676935-8677345
Length = 616
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 100 AARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTR 240
AA T+ P+R +AR +T AAA R + +A + R+ R G R
Sbjct: 5 AAATFTPSRLAARPATPAAAAAPVR--ARAAVAAGGRRRTSRRGGVR 49
>03_01_0186 + 1491202-1491210,1491401-1491476,1491573-1492075
Length = 195
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 203 TMQPALVATLVHASVTPVLQEDTSPVSPVTDKED---DSRKDGPSPELENGGDRK 358
T+ P V + + + P E P K++ D++KDG + E GGD K
Sbjct: 47 TVDPVNVVSKLRKASWPAYIESLGPAKEPEKKKEGGGDAKKDGGDGKKEGGGDGK 101
>10_02_0099 - 5295513-5296400
Length = 295
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 97 HAARTYAPARSSARQSTAPAAACHARRPSTSA 192
H +R+ + + + ++APAAA HA++ +T+A
Sbjct: 165 HLSRSSSKPPTPTKTASAPAAADHAKKANTAA 196
>04_01_0406 - 5345149-5345935,5346302-5346339
Length = 274
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +1
Query: 85 GTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRR 225
GT+ HAAR APAR + STA ++ S S SH T S+R
Sbjct: 131 GTK-HAARVMAPARRGSIISTASLSS------SVSGTASHAYTTSKR 170
>03_03_0217 + 15500943-15502196
Length = 417
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 124 RSSARQSTAPAAACHARRPSTSARTSHNATRSRR 225
R S TAPAAA R S ++RT A SRR
Sbjct: 277 RRSVSAVTAPAAASSGRWASAASRTMSAARPSRR 310
>09_04_0249 + 16070331-16070828
Length = 165
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 127 SSARQSTAPAAACHARRPSTSARTSHNATR 216
SS+R S P+ C A STSAR+SH R
Sbjct: 18 SSSRISRTPSG-CSASAGSTSARSSHGGGR 46
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 112 YAPARSSARQSTAPAAACHARRPSTSARTS 201
YAP+ S + AA +AR PST A T+
Sbjct: 233 YAPSAGSTSSFSVAAAEAYARPPSTPAITA 262
>02_02_0343 + 9163976-9165220
Length = 414
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 21 AACPCRLSLI--FHRIQSMQGLHRHPCP 98
A CP LSL H I S+Q LH + CP
Sbjct: 341 ADCPSLLSLPDGLHHISSLQKLHIYNCP 368
>01_02_0036 +
10468636-10468938,10469014-10469109,10469247-10469453,
10470762-10471097,10471469-10471582,10471634-10471639
Length = 353
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 115 APARSSARQSTAPAAACHARRPSTSARTSHNA 210
APAR + Q A AA R+P S R A
Sbjct: 281 APARENGEQQAAAAAELPCRKPRVSVRARSEA 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,645,045
Number of Sequences: 37544
Number of extensions: 202140
Number of successful extensions: 1116
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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