Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 30 1.0
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12) 29 1.8
SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6) 29 2.3
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09) 29 2.3
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 28 4.1
SB_43507| Best HMM Match : DUF35 (HMM E-Value=7.6) 28 4.1
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 28 4.1
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 28 4.1
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2) 28 5.4
SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09) 28 5.4
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_31580| Best HMM Match : Ion_trans (HMM E-Value=0.043) 27 7.1
SB_6911| Best HMM Match : Ank (HMM E-Value=0) 27 7.1
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052) 27 9.4
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 87 HPCP--CRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 212
HPCP C + T L P I P C+ + P H+ P+ +C+
Sbjct: 320 HPCPLPCFEECKPCTELLPKII-PECQHEQQVPCHIDPWEFKCS 362
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 82 TGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 219
+G + ++T P + +QST P A H RR ST R+ +++ S
Sbjct: 1093 SGPVSLTSKTPGPVSLTTKQSTKPEAKKHKRRSSTPERSDSDSSVS 1138
>SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12)
Length = 211
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 224 ATLVHASVTPVLQEDTSPVSPVTDKEDDSRKDGPSPELENGGDRKGD 364
A +H P+ + D ++ + + + RK+G +LE GGDR GD
Sbjct: 64 ADKIHGKTIPLGKVDGEQMTKILNLIESGRKEGA--KLEVGGDRAGD 108
>SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6)
Length = 286
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 93 CPCRPYLRTRTVLCPPIYR--PRCRLSRTPPLHLSPYITQCNPLSSRLWYTPLLRPFCKK 266
C RP+ R PP+ P R PLHL P T S+ L+ + L+RP+C
Sbjct: 181 CLVRPWCSARVRSSPPLASLDPGVR-QEYGPLHLLPRWTLVFGKSTVLFTSCLVRPWCSA 239
Query: 267 ILRRFRP 287
+R P
Sbjct: 240 RVRSSPP 246
>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
Length = 918
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 102 RPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 212
+PYLRT TV P + + +L RT L P C+
Sbjct: 324 KPYLRTFTVADPKVQLYQAKLHRTASAPLGPQRISCS 360
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 218 LVATLVHASVTPVLQEDTSPVSPVTDKEDDSRKDGPSPELENGGDRKGDSQS 373
LV LV S + + P P E +KD P P+ G +K + ++
Sbjct: 156 LVIALVSISTAEMKSKTKKPAVPAKKSEGPMKKDEPKPKKSKGPIKKDEPKA 207
>SB_43507| Best HMM Match : DUF35 (HMM E-Value=7.6)
Length = 326
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 200 HTMQPALVATLVHASVTPVLQEDTSPVSPVTDKEDDSR 313
HTM+ + T SV +Q DT+ +SP + +E DSR
Sbjct: 96 HTMKQ--IITTYEKSVRCTVQRDTTDLSPCSHEEADSR 131
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 99 CRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNP--LSSRLWYTPLLRP 254
C PY + +L P+ P P H PY C+P S+R+ PL+ P
Sbjct: 181 CSPYYTSTRMLTVPLITPLPVFYLFPLSHQYPY-ANCSPYYTSTRMLTVPLITP 233
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 85 GTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSR 222
G R A+ Y ARS ++ +A AA R AR+ +A+RSR
Sbjct: 236 GPRGRAS--YRSARSGRQRDSARKAAAGGRTADQGARSGDSASRSR 279
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +3
Query: 339 RTVATVRETPRVDTDVSVAAAEAHRTVIAAEALSLIVKAVTAIGADKV----VITKTDRT 506
RT V T RV TD+ V + + RT + + + + I D+V +T TDR
Sbjct: 1004 RTDLHVTSTDRVRTDLHVTSTDRVRTDLRVTSTDRVKTDLHVISTDRVRTDLHVTSTDRV 1063
Query: 507 GKDFK 521
D +
Sbjct: 1064 RTDLR 1068
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +3
Query: 339 RTVATVRETPRVDTDVSVAAAEAHRTVIAAEALSLIVKAVTAIGADKV----VITKTDRT 506
RT V T RV TD+ V + + RT + + + + I D+V +T TDR
Sbjct: 1220 RTYLRVISTDRVRTDLHVTSTDRVRTDLRVISTDRVRTDLHVISTDRVRTDLRVTSTDRV 1279
Query: 507 GKDFK 521
D +
Sbjct: 1280 RTDLR 1284
>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
Length = 454
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +3
Query: 54 HRIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNPLSSRLW 233
H +SM + P PC L T +L P YRP ++ P P T P W
Sbjct: 98 HAYRSMGTVPLVPSPCYRPLVTVPLLPSPGYRPMGTVALVPSSCYRPLGTV--PWVPSPW 155
Query: 234 YTPLL 248
Y PL+
Sbjct: 156 YRPLV 160
>SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)
Length = 584
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 315 KMDRVQS*RTVATVRETPRVDTDVSVAAAEAHRTVIAAEALSLIVKAVTAIGADKVVITK 494
K+D ++ V TVR +VDT +V + RTV + + K TA KV +
Sbjct: 485 KVDTARTVFEVDTVRTVFKVDTARTVFKVDTARTVFEVDTARTVFKVDTARTVFKVDTAR 544
Query: 495 T 497
T
Sbjct: 545 T 545
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 135 PPIYRPRCRLSRTPPLHLSPYITQCNPLSSRLWYTPLLRP 254
P Y+P S P+ L PY T P+SS + P P
Sbjct: 887 PASYQPSAPSSMPAPVPLQPYNTPMPPISSTPYQAPPTLP 926
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 27.9 bits (59), Expect = 5.4
Identities = 26/104 (25%), Positives = 34/104 (32%)
Frame = +3
Query: 12 RNLAACPCRLSLIFHRIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLS 191
R + CPC F+ M C C+P T P P+ T P +
Sbjct: 3237 RVIKGCPCEPGGCFNNGTCMANATIPTCKCQPGYTGLTCKFKPFNPPQDTDPETEPWNFM 3296
Query: 192 PYITQCNPLSSRLWYTPLLRPFCKKILRRFRP*PIKKTIPEKMD 323
P I L S + CK+ +P P TI E D
Sbjct: 3297 PLILLLLGLLSLALFLA-----CKRRPEEAKPLPAHATIREYQD 3335
>SB_31580| Best HMM Match : Ion_trans (HMM E-Value=0.043)
Length = 532
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 263 EDTSPVSPVTDKED-DSRKDGPSPEL 337
+D + PVTD+ED D D P+PE+
Sbjct: 462 QDNALTDPVTDREDEDEPADMPTPEM 487
>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
Length = 1961
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 30 PCRLSLIFHRIQSMQGLHRHPCPCRP 107
P +++ + R+ M+ LH+H PC P
Sbjct: 926 PMQIAAQYGRVSVMEVLHKHGAPCDP 951
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 73 RVCTGTRAHAA-RTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 219
R GT + ++ ++ P RSS ST RPS++++ S++ TRS
Sbjct: 19 RAKKGTSSTSSPKSSRPGRSSLASSTDSITQTSNARPSSASKPSNSRTRS 68
>SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)
Length = 532
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = +3
Query: 6 ESRNLAACPCRLSLIFH----RIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRT 173
++ ++ P R L +H + + Q H P R +L L PP ++ T
Sbjct: 175 QTYHVTLTPPRKHLTYHVTLTQPRKHQTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLT 234
Query: 174 PP-LHLSPYITQCNPLSSRLWYTPLLRP 254
PP HL+ ++T P + ++ L P
Sbjct: 235 PPRKHLTYHVTLTPPRKHQTYHVTLTPP 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,950,586
Number of Sequences: 59808
Number of extensions: 230748
Number of successful extensions: 1240
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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