Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    28   3.5  
AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical ...    28   4.7  
U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical...    27   8.1  
AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    27   8.1  
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    27   8.1  

>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 138 PIYRPRCRLSRTPPLHLSPYITQCNPLSSRLWYTPLLRPFCKKILRRFRP*PIKKTIPEK 317
           P+Y  RCR+S T P+  S  ++  +P    L   P  +   K+I    +P P  +++   
Sbjct: 136 PVYEERCRVSLTIPISSSEDLSAVSP-PPPLPSVPPSKERIKRIPSYLKPTPAPRSMSAT 194

Query: 318 MDRVQ 332
           + R +
Sbjct: 195 LPRAR 199


>AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical
           protein Y42G9A.2 protein.
          Length = 121

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 227 TLVHASVTPVLQEDTSPVSPVTDKEDDSRKDG 322
           T  H++V P L   T+ ++PVT+K + ++K+G
Sbjct: 76  TQYHSTVVPCLSSTTT-LAPVTEKMEKTKKNG 106


>U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical
           protein T09B4.5a protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 103 ARTYAPARSSARQSTAPAAACHARRPSTSART-SHNATRSRRDSGT 237
           +++ +PA+S+ + S +PA A  +    T +R+ S +ATR R  S T
Sbjct: 29  SKSPSPAKSARKASKSPARARTSNVKKTPSRSASKSATRGRTASKT 74


>AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical
           protein C46E10.9 protein.
          Length = 393

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 70  CRVCTGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSG 234
           CR   GT  +    +    S+   S+APA+ C  R    +  TS +++ S   SG
Sbjct: 305 CRKHFGTAKYFLIHHYYYHSTDLTSSAPASTCSTRWSPMTVSTSESSSTSESSSG 359


>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 103 ARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 219
           A T A A S A  S   A +  ARRP+T+ R +  A  S
Sbjct: 161 AETAASASSEASTSNGVATSSSARRPATAKRDTLAAPTS 199


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 103 ARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 219
           A T A A S A  S   A +  ARRP+T+ R +  A  S
Sbjct: 161 AETAASASSEASTSNGVATSSSARRPATAKRDTLAAPTS 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,381,261
Number of Sequences: 27780
Number of extensions: 150168
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)