Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A12f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 29 2.5
At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident... 29 2.5
At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident... 29 2.5
At2g18470.1 68415.m02151 protein kinase family protein contains ... 29 2.5
At1g73270.1 68414.m08479 serine carboxypeptidase S10 family prot... 28 3.3
At4g30820.2 68417.m04368 cyclin-dependent kinase-activating kina... 28 4.4
At4g30820.1 68417.m04367 cyclin-dependent kinase-activating kina... 28 4.4
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 28 4.4
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 28 4.4
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 27 5.8
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put... 27 5.8
At1g45688.2 68414.m05201 expressed protein 27 5.8
At1g45688.1 68414.m05202 expressed protein 27 5.8
At5g38680.1 68418.m04677 kelch repeat-containing F-box family pr... 27 7.7
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)... 27 7.7
At5g06100.1 68418.m00677 myb family transcription factor (MYB33)... 27 7.7
>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 485
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +3
Query: 87 HPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNPLS 221
HP P P T T + PPI R S PP H S + NP S
Sbjct: 21 HP-PSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSS 64
>At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 514
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +3
Query: 87 HPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNPLS 221
HP P P T T + PPI R S PP H S + NP S
Sbjct: 21 HP-PSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSS 64
>At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 483
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +3
Query: 87 HPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNPLS 221
HP P P T T + PPI R S PP H S + NP S
Sbjct: 21 HP-PSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSS 64
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 263 EDTSPVSPVTDKEDDSRKDGPSPELENGGDRKGD 364
+ TSP +P +S + PSP + GG +G+
Sbjct: 52 DSTSPPAPQAPNPPNSSNNSPSPPSQGGGGERGN 85
>At1g73270.1 68414.m08479 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase I precursor
(SP:P07519) [Hordeum vulgare], glucose acyltransferase
GB:AAD01263 [Solanum berthaultii]; contains Pfam
profile: PF00450 Serine carboxypeptidase;
Length = 441
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +3
Query: 105 PYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQC-------NPLSSRLWYTPLLRPFCK 263
PY ++ +Y R+ + H+ PY T+C N +S+L+ + +L P C+
Sbjct: 232 PYAHGMALISDELYESLKRICKGEYEHVDPYNTECLKLLEEFNECTSKLYRSHILYPLCE 291
>At4g30820.2 68417.m04368 cyclin-dependent kinase-activating kinase
assembly factor-related / CDK-activating kinase assembly
factor-related contains similarity to CDK-activating
kinase assembly factor MAT1 (RING finger protein MAT1)
(Menage a trois) (CDK7/cyclin H assembly factor)
(Swiss-Prot:P51950) [Marthasterias glacialis]
Length = 178
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 133 ARQSTAPAAACHARRPSTSARTSHN 207
A + TA AAC A+ P T A TS N
Sbjct: 83 AEELTAALAACKAKPPQTDADTSSN 107
>At4g30820.1 68417.m04367 cyclin-dependent kinase-activating kinase
assembly factor-related / CDK-activating kinase assembly
factor-related contains similarity to CDK-activating
kinase assembly factor MAT1 (RING finger protein MAT1)
(Menage a trois) (CDK7/cyclin H assembly factor)
(Swiss-Prot:P51950) [Marthasterias glacialis]
Length = 178
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 133 ARQSTAPAAACHARRPSTSARTSHN 207
A + TA AAC A+ P T A TS N
Sbjct: 83 AEELTAALAACKAKPPQTDADTSSN 107
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 88 TRAHAARTYAPARSSARQSTAPAA--ACHARRPSTSARTSHNATRSRRDS 231
T H R+ PA + + P A ACH RRP A T+ + + R S
Sbjct: 18 TAGHHRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPS 67
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Frame = +3
Query: 105 PYLRTRTVLCPPIYRPRC------RLSRTPPLHL-SPYITQCNPLSSRLWYTPLLRPFCK 263
P + + L PP+Y+P + + PP++ SP + P + + YTP +P+
Sbjct: 149 PPVNNKPSLSPPVYKPTLSPPVYTKPTLPPPVYKKSPSYSPPPPFAPKPTYTPPTKPYVP 208
Query: 264 KILR 275
+I++
Sbjct: 209 EIIK 212
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 165 SRTPPLHLSPYITQCNPLSSRLWYTPLLRPFCKKILRRFRP*PIKKTIP 311
+R P L+ P++ +P ++R + + RP C +RR R +++ +P
Sbjct: 214 ARQPYLNPDPFVNNRDPNAARPGPSNM-RPLCPNAIRRHRQEKLERALP 261
>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 786
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 360 PLRSPPFSNSGLGPSFLESSSLSVTGETGEV 268
P+ P+S+ G +F S+ TGE+G V
Sbjct: 33 PIEESPYSDPSTGLTFTSDSTFIQTGESGRV 63
>At1g45688.2 68414.m05201 expressed protein
Length = 248
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 363 SPLRSPPFSNSGLGPSFLESSSLSVTG 283
SP+ SPP S+S +G ESSS +G
Sbjct: 52 SPMGSPPHSHSSMGRHSRESSSSRFSG 78
>At1g45688.1 68414.m05202 expressed protein
Length = 342
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 363 SPLRSPPFSNSGLGPSFLESSSLSVTG 283
SP+ SPP S+S +G ESSS +G
Sbjct: 52 SPMGSPPHSHSSMGRHSRESSSSRFSG 78
>At5g38680.1 68418.m04677 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 357
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 135 PPIYRPRCRLSRTPP-LHLSPYITQCNPLSSRLWYTPLLRP 254
P +Y+ R L+RT L++ Y+ NP S W+T L+P
Sbjct: 53 PELYKERSLLNRTEGCLYVCLYL---NPFESPSWFTLCLKP 90
>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 520
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 195 YITQCNPLSSRLWYTPLLRPFCKKILRR--FRP*PIKKTIPEKMDRVQS 335
++T P S RLW + LL P C +++ P + T P+ + + S
Sbjct: 221 FMTPTIPSSKRLWESELLYPGCSSTIKQEFSSPEQFRNTSPQTISKTCS 269
>At5g06100.1 68418.m00677 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 451
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 195 YITQCNPLSSRLWYTPLLRPFCKKILRR--FRP*PIKKTIPEKMDRVQS 335
++T P S RLW + LL P C +++ P + T P+ + + S
Sbjct: 221 FMTPTIPSSKRLWESELLYPGCSSTIKQEFSSPEQFRNTSPQTISKTCS 269
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,034,825
Number of Sequences: 28952
Number of extensions: 144614
Number of successful extensions: 730
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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