Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 29 2.3
10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257 28 4.0
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 28 4.0
04_01_0588 + 7657510-7657992,7658397-7658843 28 4.0
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 28 5.2
08_01_0776 + 7533790-7533984,7534234-7534419,7534542-7534631,753... 27 6.9
03_02_0231 - 6608910-6608997,6609169-6609320,6609561-6609608 27 6.9
11_04_0024 - 12376642-12377362,12377614-12377849 27 9.1
10_07_0003 - 11720435-11720950,11721621-11721827 27 9.1
08_02_0122 + 12805419-12805438,12805842-12805989,12806155-128063... 27 9.1
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 27 9.1
03_04_0210 + 18592086-18592553 27 9.1
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 232 HYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAG 342
HY+ I+ G + + D ++T+ G RT +V ++AG
Sbjct: 325 HYQHIIEGTINAMSRDDERLLTIEGCRTALLVLRYAG 361
>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
Length = 421
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 400 PVCWAPSLCPGSKD 359
PVCWAP PGS D
Sbjct: 241 PVCWAPPSAPGSYD 254
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 28.3 bits (60), Expect = 4.0
Identities = 29/90 (32%), Positives = 41/90 (45%)
Frame = +1
Query: 229 NHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDTRRAPSKQGQF 408
N Y L+ N V+ D +V + ++ Q G + LD DTR +PSKQ
Sbjct: 591 NIYYLLANDTVDDIIWD------VVQGKLENLGQMLDGQEKTLDVSQSDTRPSPSKQ--- 641
Query: 409 QLFADTLTKFDEECTNSVVEADDLPKTEVP 498
TL + + C+NS EAD PK + P
Sbjct: 642 ----KTLDAYLKRCSNS-TEADQ-PKLKNP 665
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 520 RWRFPHDLGLQFWADRQPRQRSSYIL 443
RWR PHD+ W D QP RSS +L
Sbjct: 196 RWRAPHDIQ---WGDNQP-SRSSGVL 217
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +1
Query: 199 PGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDT 378
P +K G+ H+ +++ R Q YV+ + H+ ++ G II+DP
Sbjct: 259 PSAFTKVTGEAHWEILLRA---RAIETQCYVIAAAQAGKHNEKRESYGDSIIIDPWGTVI 315
Query: 379 RRAPSK 396
R P +
Sbjct: 316 ARLPDR 321
>08_01_0776 +
7533790-7533984,7534234-7534419,7534542-7534631,
7535284-7535368,7535759-7535925,7536250-7536438,
7537183-7537296,7537391-7537510,7537590-7537712,
7538217-7538315,7538735-7538791,7539272-7539318,
7539391-7539534,7540028-7540205,7540663-7540743,
7540926-7541009,7541416-7541616
Length = 719
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 409 QLFADTLTKFDE-ECTNSVVEADDLPKTEVPGH 504
+++AD + + ECT+SV++A L + + PGH
Sbjct: 481 EIYADIIVEHQYVECTSSVIQALALFREKYPGH 513
>03_02_0231 - 6608910-6608997,6609169-6609320,6609561-6609608
Length = 95
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 193 PGPGVGSKSPGDNH--YRLIVNGEVERYAPDQRYVVTLVGSRTH 318
P G G P H + +I+NGEVE P+ + + G+ H
Sbjct: 9 PNNGSGPPPPSLKHVIFHVIINGEVEGIGPNSPKLSYMSGTSIH 52
>11_04_0024 - 12376642-12377362,12377614-12377849
Length = 318
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 520 RWRFPHDLGLQFWADRQPRQRS 455
RWR PHD+ W D QP + S
Sbjct: 234 RWRAPHDIQ---WGDNQPSRSS 252
>10_07_0003 - 11720435-11720950,11721621-11721827
Length = 240
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 520 RWRFPHDLGLQFWADRQPRQRS 455
RWR PHD+ W D QP + S
Sbjct: 136 RWRAPHDIR---WGDNQPSRSS 154
>08_02_0122 +
12805419-12805438,12805842-12805989,12806155-12806380,
12806501-12807117
Length = 336
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 520 RWRFPHDLGLQFWADRQPRQRS 455
RWR PHD+ W D QP + S
Sbjct: 254 RWRAPHDIQ---WGDNQPSRSS 272
>03_06_0209 - 32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +1
Query: 259 VER-YAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDTRRAPSKQGQFQLFADTLTK 435
+ER Y P Y+V +G HD+ F LD RA + G D L
Sbjct: 1332 IERNYKPKFEYLVAEMGGGVHDIKAFPQYFTFSLDKRIAPRHRAAADAGVSLPLPDMLKA 1391
Query: 436 FDEECTNSVVEADDLPK 486
DEE + + +L K
Sbjct: 1392 TDEEFMEMLDKEIELQK 1408
>03_04_0210 + 18592086-18592553
Length = 155
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 520 RWRFPHDLGLQFWADRQPRQRS 455
RWR PHD+ W D QP + S
Sbjct: 51 RWRAPHDIQ---WGDNQPSRSS 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,312,997
Number of Sequences: 37544
Number of extensions: 250511
Number of successful extensions: 715
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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