Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)              30   1.3  
SB_1139| Best HMM Match : wnt (HMM E-Value=0)                          29   3.1  
SB_112| Best HMM Match : DUF1059 (HMM E-Value=7.3)                     29   3.1  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   4.1  
SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)              28   4.1  
SB_54609| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)         27   7.1  

>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
          Length = 769

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 185 SQASAADTRPSHTKILRLPILFGLK 111
           ++ASAAD RP HT  L  P++ G K
Sbjct: 8   NEASAADRRPGHTARLHSPLMAGPK 32


>SB_1139| Best HMM Match : wnt (HMM E-Value=0)
          Length = 500

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 373 PGSKDQGLF*SPQTVVLRHECGNRPESRH 287
           PG++D GLF S Q    +  C +R  SRH
Sbjct: 35  PGNEDGGLFPSMQAARAQEACRSRAVSRH 63


>SB_112| Best HMM Match : DUF1059 (HMM E-Value=7.3)
          Length = 291

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 391 SKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVP 498
           +++G F   A+ +  F E+C  S+ E  + P  E P
Sbjct: 73  AREGDFNSLAENILVFQEQCCGSIYEQMENPDEEGP 108


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 421 DTLTKFDEECTNSVVEAD 474
           D++TK DEE TNSV + D
Sbjct: 483 DSITKLDEELTNSVTQQD 500


>SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 154 LGLVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQR-YVVTLVGSR 312
           LGL +A++  + +    +G    G++  RL+  G VERY+P+ R + V+L   R
Sbjct: 172 LGLSAASI--DNSSSVVMGVVGLGNDTARLVYTGGVERYSPESRAFAVSLFDQR 223


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 212 EPTPGPGFSSQASAADTRPSHTKILRLPIL 123
           +PTP P   S     DTRP    I R+P++
Sbjct: 582 QPTPPPQTPSATRRTDTRPRPVSIERVPLM 611


>SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
          Length = 539

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 391 SKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVP 498
           +++G F   A+ +  F E+C  S+ E  + P  E P
Sbjct: 68  AREGDFNSLAEDILVFQEQCCGSIYEQMENPDEEGP 103


>SB_54609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 461 TEFVHSSSNLVKVSAKS--WNCPC 396
           +EF +  +NLV VSAKS  W C C
Sbjct: 77  SEFGNCQNNLVPVSAKSCPWTCGC 100


>SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)
          Length = 966

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 214 KSPGDNHYRLIVNGEVERYAPDQRYV 291
           +S GD   R++VN E +R  P + YV
Sbjct: 669 RSQGDTESRIVVNFETKRAIPHKHYV 694


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,709
Number of Sequences: 59808
Number of extensions: 281487
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)