Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 40 0.001
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 1.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 1.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 1.5
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 29 1.5
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 29 1.5
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 29 1.5
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 29 1.5
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 29 1.5
L15314-2|AAF99983.1| 322|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 28 3.5
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 3.5
AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical... 28 4.7
AF098987-5|ABD63222.1| 263|Caenorhabditis elegans Hypothetical ... 27 6.2
AF098987-4|AAC67429.1| 496|Caenorhabditis elegans Hypothetical ... 27 6.2
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +1
Query: 181 CELNPGPGVGSKSPGDNHYRLIVNGEVER-------YAPDQRYVVTLVGSRTHDVVQQFA 339
C + P G KSPG N Y + +NG + + P + Y V++ G RT V+ F
Sbjct: 27 CTIKPYEAKGDKSPGSNGYVIEINGTTTKSMDISKGFVPGEIYKVSIRGWRTQYTVKTFR 86
Query: 340 GFKIILDPLNPDTRRAPSKQ 399
GF ++ L D A S Q
Sbjct: 87 GF--VVSSLFEDNTSAGSWQ 104
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/120 (22%), Positives = 47/120 (39%)
Frame = +1
Query: 160 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 339
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 340 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVPGHVESAT 519
IL+P + R +PS +G+ LFA +T E +++ L + + AT
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPLKLRVMASSLPPAT 625
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/120 (22%), Positives = 47/120 (39%)
Frame = +1
Query: 160 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 339
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 340 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVPGHVESAT 519
IL+P + R +PS +G+ LFA +T E +++ L + + AT
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPLKLRVMASSLPPAT 625
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/120 (22%), Positives = 47/120 (39%)
Frame = +1
Query: 160 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 339
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 340 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVPGHVESAT 519
IL+P + R +PS +G+ LFA +T E +++ L + + AT
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPLKLRVMASSLPPAT 625
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/120 (22%), Positives = 47/120 (39%)
Frame = +1
Query: 160 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 339
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 340 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVPGHVESAT 519
IL+P + R +PS +G+ LFA +T E +++ L + + AT
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPLKLRVMASSLPPAT 625
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/120 (22%), Positives = 47/120 (39%)
Frame = +1
Query: 160 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 339
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 340 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVPGHVESAT 519
IL+P + R +PS +G+ LFA +T E +++ L + + AT
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPLKLRVMASSLPPAT 625
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/120 (22%), Positives = 47/120 (39%)
Frame = +1
Query: 160 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 339
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 340 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVPGHVESAT 519
IL+P + R +PS +G+ LFA +T E +++ L + + AT
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPLKLRVMASSLPPAT 625
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/120 (22%), Positives = 47/120 (39%)
Frame = +1
Query: 160 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 339
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 340 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVPGHVESAT 519
IL+P + R +PS +G+ LFA +T E +++ L + + AT
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPLKLRVMASSLPPAT 625
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/120 (22%), Positives = 47/120 (39%)
Frame = +1
Query: 160 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 339
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 340 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVPGHVESAT 519
IL+P + R +PS +G+ LFA +T E +++ L + + AT
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPLKLRVMASSLPPAT 625
>L15314-2|AAF99983.1| 322|Caenorhabditis elegans Hypothetical
protein K06H7.7 protein.
Length = 322
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 277 PAHIAQLLR*QSACSDC----LQVTLNLLQDLDLARRPVP 170
P H ++L+ +C DC L V + L LDL+ P+P
Sbjct: 170 PGHFVEMLKEDCSCRDCGSADLAVKVRLTVPLDLSDIPIP 209
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 361 PLNPDTRRAPSKQGQFQLFA-DTLTKFDEECTNSVVEADDLPKTE 492
PL+ DT++ SK + +L D DEECTN A +L +TE
Sbjct: 188 PLD-DTQKLKSKSERNRLIREDENDDSDEECTNKFYSARELLRTE 231
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 361 PLNPDTRRAPSKQGQFQLFA-DTLTKFDEECTNSVVEADDLPKTE 492
PL+ DT++ SK + +L D DEECTN A +L +TE
Sbjct: 188 PLD-DTQKLKSKSERNRLIREDENDDSDEECTNKFYSARELLRTE 231
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 337 QTVVLRHECGNRPESRHISDPAHIAQLLR*QSACSD 230
+ + L HECG R +S H++ AH LR +D
Sbjct: 448 RAIYLLHECGQRVDSVHVAVLAHKLGYLRMSKKSTD 483
>AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical
protein F41G4.8 protein.
Length = 242
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 151 WLGLVSAALACELNPGPGVGSKSPGDNHY--RLIVNGEVERYAPDQRYVVT 297
+L L+SAA++C+ G G ++ D ++ RLI N + Y + Y +T
Sbjct: 5 FLYLLSAAVSCQFQDFEGSGEEALIDEYWLQRLIENVGIPHYLTQKAYQLT 55
>AF098987-5|ABD63222.1| 263|Caenorhabditis elegans Hypothetical
protein F40H3.1b protein.
Length = 263
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 207 RFKVTWRQSLQADC*RRS*AICAGSEICR 293
R K+ WRQS+ +C +S A CA E C+
Sbjct: 201 RSKIRWRQSVCEEC--KSVAECANCEECK 227
>AF098987-4|AAC67429.1| 496|Caenorhabditis elegans Hypothetical
protein F40H3.1a protein.
Length = 496
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 207 RFKVTWRQSLQADC*RRS*AICAGSEICR 293
R K+ WRQS+ +C +S A CA E C+
Sbjct: 434 RSKIRWRQSVCEEC--KSVAECANCEECK 460
>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
protein T19A5.1 protein.
Length = 1280
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 232 HYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKII 354
H+++ +G+ + PD RY + L GS T D + Q K++
Sbjct: 25 HWKISEDGKKIQAVPDTRYHLKLPGSLT-DFITQVENVKVV 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,983,697
Number of Sequences: 27780
Number of extensions: 201396
Number of successful extensions: 516
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -