Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 381 PCVRVQRIKDYFEARKLLYYVMSA 310
           P  R+QR+ D+F    LL + ++A
Sbjct: 49  PLDRLQRVVDWFRKNMLLVFTIAA 72


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 151 WLGLVSAALACELNPGPGVGSKSPGD 228
           +L   S  LA E    PG GSK P D
Sbjct: 42  FLQCASLKLAFEPRRNPGPGSKGPRD 67


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 392 LGALLVSGFKGSRIILKPANCC 327
           L A++VSG KGS I +     C
Sbjct: 227 LKAMVVSGSKGSNINISQVIAC 248


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 199 DLDLARRPVPRTLGPATLKFSDCPFYLGLRRT 104
           D D  R P       AT +    PF +G RRT
Sbjct: 383 DSDGIRLPCREVEAAATARNVVAPFLIGSRRT 414


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 317  MT*YNSLRASK*SLIL*TRTQGGRP 391
            +T YN +     S +L TRT+G +P
Sbjct: 1437 VTAYNGIGTGDPSDMLNTRTKGSKP 1461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,661
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)