Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51490.1 68418.m06386 pectinesterase family protein contains ...    29   1.4  
At2g25850.2 68415.m03104 nucleotidyltransferase family protein c...    28   4.4  
At2g25850.1 68415.m03103 nucleotidyltransferase family protein c...    28   4.4  
At4g00300.1 68417.m00037 fringe-related protein + weak similarit...    27   5.8  
At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilas...    27   7.7  

>At5g51490.1 68418.m06386 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 536

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 482 GRSSASTTEFVHSSSNLVKVSAKSWNCPCLLGALLVSGFKGS 357
           G S  + T+F+    +  K+S    NC  + GALL +G KG+
Sbjct: 154 GSSDLNVTDFITPIVSNTKISHLISNCLAVNGALLTAGNKGN 195


>At2g25850.2 68415.m03104 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain; identical to cDNA GI:31747890
          Length = 800

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 223 QVTLNLLQDLD--LARRPVPRTLGPATLKFSDCPFYLGLRRTD 101
           Q+TL + +D +  L   P P      + +F  C F++GL+R D
Sbjct: 404 QLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRAD 446


>At2g25850.1 68415.m03103 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain; identical to cDNA GI:31747890
          Length = 787

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 223 QVTLNLLQDLD--LARRPVPRTLGPATLKFSDCPFYLGLRRTD 101
           Q+TL + +D +  L   P P      + +F  C F++GL+R D
Sbjct: 404 QLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRAD 446


>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 785

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +1

Query: 187 LNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKI 351
           L  G G   KS      +    G      PD  Y    VG R++ +V    GFK+
Sbjct: 550 LKTGDGSSEKSYFTGRIKYRRGGASREVGPDNVYNTARVGKRSNGLVDMSWGFKV 604


>At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilase 1
           [Mus musculus] GI:3228668; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 307

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/75 (22%), Positives = 32/75 (42%)
 Frame = +1

Query: 199 PGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDT 378
           P   +K  G+ H+ +++     R    Q YV+    +  H+  ++  G  +I+DP     
Sbjct: 212 PSAFTKVTGEAHWEILLRA---RAIETQCYVIAAAQAGKHNEKRESYGDTLIIDPWGTVV 268

Query: 379 RRAPSKQGQFQLFAD 423
            R P +     + AD
Sbjct: 269 GRLPDRVSTGIVVAD 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,516,673
Number of Sequences: 28952
Number of extensions: 188872
Number of successful extensions: 499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)