Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.97 
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    27   2.2  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   5.2  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   5.2  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.2  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   5.2  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   6.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.0  

>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 362 SCSDYILYNSDPTGEPSLRASFVYQSDYRLATISSSSASPCVVRCIDL 219
           SC+ +  Y+S    E S  AS+ Y S    AT SSSS +      +D+
Sbjct: 139 SCNSFPEYSSYSASETSSVASYSYYSGPNPATPSSSSCNLVNANSLDI 186


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 434 GIWHTAIVAYDREFFYGANGITSCTPV 514
           GI+HT +V   +E+ +GA+ I   T V
Sbjct: 26  GIYHTGLVLEGKEYAFGAHEIPGSTGV 52


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 236 RRKERPTTMKSLRVDSHFDRQNWRADLAHQLGHYYTKYN 352
           RRKE+  T  + R  SH   + +R  L+    H  T Y+
Sbjct: 136 RRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYH 174


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 308 ADLAHQLGHYYTKYNL 355
           A L H+LGH+Y  +NL
Sbjct: 328 AILGHELGHWYMSHNL 343


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 53  RPHSILICYEICFKD--LCCWSTYTLTTPAYYFCVLVDILNYI 175
           R   +LI + I F    +C W     T   YY C+LV    Y+
Sbjct: 561 RNAKLLIAFTILFLVGLICGWRLNRFTMFIYYLCILVLATYYV 603


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 71  ICYEICFKDLCCWSTYTLTTPAYYFCVLVDILNY 172
           +CY +C+      S  +L  P YY  ++ ++  Y
Sbjct: 763 LCYNLCYVYARATSAVSLVPPVYYAHLVSNLARY 796


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 413  TAGRDVEGIWHTAIVAYDREFFYGA 487
            T+G+ +  IW T      R F+YGA
Sbjct: 1382 TSGKSLLNIWRTPNERPGRHFYYGA 1406


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 325  LVSQVCAPVLSIKVTIDSQRFHRRRPLLASS 233
            L +Q    VLS +  ID  R +R  PLLAS+
Sbjct: 1223 LANQEFWSVLSKRTVIDVVRANRHSPLLAST 1253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,771
Number of Sequences: 5004
Number of extensions: 46313
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)