Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1195 - 34898383-34899034,34899123-34899220,34899326-34899334 37 0.011
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 29 3.0
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 5.2
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 27 6.9
12_02_1139 - 26402332-26402367,26402915-26402953,26403136-264032... 27 9.1
05_04_0066 + 17621532-17621619,17621658-17621820,17621864-176222... 27 9.1
04_03_0468 + 16249716-16249822,16250080-16250233,16250788-16251138 27 9.1
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 27 9.1
>02_05_1195 - 34898383-34899034,34899123-34899220,34899326-34899334
Length = 252
Score = 36.7 bits (81), Expect = 0.011
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 419 GRDVEGIWHTAIVAYDREFFYGANGITS 502
G+ +E IWHT +V Y E+F+G GI S
Sbjct: 29 GKPIEAIWHTGVVVYGNEYFFG-GGIQS 55
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 170 NLRYQPKHRNSKQVSLVCKWTNNTSP 93
N+ P+ S V L C WT +TSP
Sbjct: 601 NINTIPQQATSPAVPLTCNWTEHTSP 626
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 415 RRPRRGRHMAHSHRGVRQGVLLRGQWHHQLHSG 513
RR ++GRH H H + G HH H G
Sbjct: 528 RRHQKGRHHRHHHDHRHRHGHSHGDHHHHYHGG 560
>03_05_0725 +
27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 383 YTFISNYGLCTAGRDVEG 436
+ ++ YGLC AGRD EG
Sbjct: 786 HDLLAEYGLCCAGRDGEG 803
>12_02_1139 -
26402332-26402367,26402915-26402953,26403136-26403287,
26403496-26403997,26404260-26404373,26404509-26404736,
26405375-26405457,26405677-26405824,26406778-26406861
Length = 461
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 218 TNQY-TGRRKERPTTMKSLRVDSHFDRQNW 304
T+Q+ G RK++ T++ L VD + QNW
Sbjct: 217 THQWQAGSRKQKAATLQGLEVDENQWSQNW 246
>05_04_0066 +
17621532-17621619,17621658-17621820,17621864-17622233,
17622548-17623009
Length = 360
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 335 SDPTGEPSLRASFVYQSDYRLATISSSSASPCVVRCIDLSKKLAYKFEQ 189
+D G + V S+Y A+ ++SSA P V C D + + Y F++
Sbjct: 17 ADGDGATATWRRSVRSSNYSSASSTASSARPRYVPCYDDADFVTYSFQR 65
>04_03_0468 + 16249716-16249822,16250080-16250233,16250788-16251138
Length = 203
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 403 WIMYRRPRRGRHMAHSHRGVRQGVLLRGQWHHQLHSGK 516
W+M R RR R + S R V+L G WH SGK
Sbjct: 98 WVMGRMQRR-RSLG-SRRRPWAAVILPGSWHPSSSSGK 133
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 478 EELPVVRHDGCVPYAFH 428
+++P +R DGC Y FH
Sbjct: 120 QDIPGIRQDGCASYFFH 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,492,631
Number of Sequences: 37544
Number of extensions: 290528
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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