Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25241| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-09)          29   2.3  
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)          29   2.3  
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)                    28   4.1  
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    28   4.1  
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  27   9.4  

>SB_25241| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-09)
          Length = 344

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 62  SILICYEICFKDLCCWS 112
           +IL C+E C KD  CW+
Sbjct: 50  TILFCFEACAKDSACWT 66


>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
          Length = 428

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 62  SILICYEICFKDLCCWS 112
           +IL C+E C KD  CW+
Sbjct: 50  TILFCFEACAKDSACWT 66


>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
          Length = 984

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -2

Query: 310 CAPVLSIKVTIDSQRFHRRRPLL--ASSGVLICLR 212
           C+ V S+  TID +R HR+R +L  ASS ++I +R
Sbjct: 515 CSVVRSLLKTIDIRRVHRQRSMLNCASSLMMIDIR 549


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 167  NYIFSMLIARTCMRVS*TNQYTGRRKERPTTMKSLRVDSHFDRQNWRA 310
            +Y  S+  A TC  V  TN  T +R  RP+ ++     S   +Q+W+A
Sbjct: 906  HYTISIAPADTCSLVKNTNISTWKRDVRPSRIRDF--GSWITKQSWQA 951


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 472 LPVVRHDGCVPYAFHV 425
           LP+V+++GC  Y FH+
Sbjct: 514 LPIVQYNGCYGYMFHI 529



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 472  LPVVRHDGCVPYAFHV 425
            LP+V+++GC  Y FH+
Sbjct: 998  LPIVQYNGCYGYMFHI 1013


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,252,237
Number of Sequences: 59808
Number of extensions: 362113
Number of successful extensions: 931
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)