Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032647-2|CAA21689.1|  178|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    29   2.7  
U29536-3|AAA68795.2|  179|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    27   6.2  
AC084155-4|AAG23365.1|  410|Caenorhabditis elegans Hypothetical ...    27   6.2  
AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear recep...    27   8.1  
AF077540-5|AAC26308.1|  417|Caenorhabditis elegans C-type lectin...    27   8.1  
AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear horm...    27   8.1  
AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear horm...    27   8.1  

>AL032647-2|CAA21689.1|  178|Caenorhabditis elegans Hypothetical
           protein Y57A10B.2 protein.
          Length = 178

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 290 QSDYRLATISSSSASPCVVRCIDLSKKLAYKFEQLALRKYNLRYQPKHRNS 138
           +SDY     ++S A   ++  I LS K++Y FE+  L+ Y +  Q KH  S
Sbjct: 5   KSDYGFRRPTTSFARAKILLKILLSFKISYNFEKTILKFYKIS-QKKHLKS 54


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 393 SRIMDYVPQAATWKAYGTQPSWRTTGSSSTGPMASP 500
           S +  Y   +A W   G + S  TTGSSS+   ++P
Sbjct: 100 SMVAKYASTSAAWSGTGQRLSGSTTGSSSSTSSSAP 135


>U29536-3|AAA68795.2|  179|Caenorhabditis elegans Hypothetical
           protein F45E12.5b protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 409 MYRRPRRGRHMAHSHRGVRQGVLLRGQ 489
           +Y++ RR +HM H+  G +  V +RGQ
Sbjct: 83  VYKQGRRAKHMPHAELGDKILVAIRGQ 109


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
            protein F53G12.3 protein.
          Length = 1503

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 406  SIIRDKCIFKQTKLCHVQIIFCIIVTQLV 320
            S+I+  C F +T   HV IIFC +   +V
Sbjct: 978  SLIQRICAFLETYRQHVFIIFCFVAINIV 1006


>AC084155-4|AAG23365.1|  410|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 472 VLLRGQWHHQLHSGKR 519
           V++R Q+HH  HSGKR
Sbjct: 119 VVVRVQFHHDFHSGKR 134


>AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 59  HSILICYEICFKDLCCWSTYTLTTPAYYF 145
           ++IL+ Y+    DL  WS YT     Y+F
Sbjct: 330 NNILLDYDEMSSDLSFWSNYTFEEMKYFF 358


>AF077540-5|AAC26308.1|  417|Caenorhabditis elegans C-type lectin
           protein 20 protein.
          Length = 417

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 434 GIWHTAIVAYDREFFYGANGITSCTPVR 517
           G+W+T    YDR+FF        C P R
Sbjct: 260 GLWYTGNCDYDRKFFCKRPAGEKCNPDR 287


>AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform b protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 59  HSILICYEICFKDLCCWSTYTLTTPAYYF 145
           ++IL+ Y+    DL  WS YT     Y+F
Sbjct: 330 NNILLDYDEMSSDLSFWSNYTFEEMKYFF 358


>AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform a protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 59  HSILICYEICFKDLCCWSTYTLTTPAYYF 145
           ++IL+ Y+    DL  WS YT     Y+F
Sbjct: 288 NNILLDYDEMSSDLSFWSNYTFEEMKYFF 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,672,019
Number of Sequences: 27780
Number of extensions: 267744
Number of successful extensions: 731
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)