Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.7  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -1

Query: 347 ILYNS-DPTGEPSLRASFVYQSDYRLATISSSSASPCVVRCIDLSKKLAYKFEQL---AL 180
           I+YN+ D + +    ++FVY   Y   TI+  S S   ++   L   L++K + L   A+
Sbjct: 211 IIYNNADDSFQRLTSSTFVYDPRYTKYTINDESFS---LQDGILGMALSHKTQNLYYSAM 267

Query: 179 RKYNLRY 159
             +NL Y
Sbjct: 268 SSHNLNY 274


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 448 CVPYAFHVAACGT 410
           CVP   HVA C T
Sbjct: 159 CVPSVKHVAKCAT 171


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 481  RGQWHHQLHSGKR 519
            RG WHH+L   KR
Sbjct: 981  RGFWHHRLAEIKR 993


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 142 IVSRCR*CVSGPTTQVL 92
           + S C+ C+SG   QVL
Sbjct: 294 VTSYCKTCISGRAFQVL 310


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 283 TIDSQRFHRRRPLLASS 233
           T+D   F++RRP  A S
Sbjct: 574 TVDEVEFYKRRPQRACS 590


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 438 YGTQPSWRTTGSSSTGPMASPVAL 509
           Y T+     TG++  GP   P+A+
Sbjct: 537 YNTRAENHQTGTAKMGPSYDPMAV 560


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,776
Number of Sequences: 438
Number of extensions: 3252
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)