Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07090.1 68416.m00843 expressed protein                             38   0.005
At5g26270.1 68418.m03135 expressed protein  ; expression support...    28   3.3  
At3g19680.1 68416.m02493 expressed protein                             28   3.3  
At3g47960.1 68416.m05229 proton-dependent oligopeptide transport...    27   7.7  
At1g28520.1 68414.m03506 expressed protein                             27   7.7  

>At3g07090.1 68416.m00843 expressed protein
          Length = 265

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 419 GRDVEGIWHTAIVAYDREFFYG 484
           G+ +EG+WHT IV Y  E+F+G
Sbjct: 29  GKVIEGVWHTGIVVYGNEYFFG 50


>At5g26270.1 68418.m03135 expressed protein  ; expression supported
           by MPSS
          Length = 305

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 65  ILICYEICFK-DLCCWSTYTLTTPAYYFCVLVDILNYIFSMLI 190
           +++ + +C+  D CC S Y LT   +     V +   +F ML+
Sbjct: 253 LIVRFALCYSYDFCCISIYPLTIVIWSVLASVVVFYVVFFMLV 295


>At3g19680.1 68416.m02493 expressed protein
          Length = 491

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 414 PQAATWKAYGTQPSWRTTGSSST 482
           P   TWK +G   +WR  G S T
Sbjct: 308 PDGCTWKPWGRLEAWREAGYSDT 330


>At3g47960.1 68416.m05229 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 606

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 169 LYFLNANCSNLYASFLDKSIHRTT 240
           ++++ A  S+  ASFL  ++HRTT
Sbjct: 509 IFYVGAGVSSYLASFLISTVHRTT 532


>At1g28520.1 68414.m03506 expressed protein
          Length = 486

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 296 VYQSDYRLATISSSSASPCVVRCIDLSKKLAYKFEQLALRKYNLRY 159
           V+Q  Y L    S    P V  C DLS      F+  A  +Y+ +Y
Sbjct: 124 VFQRGYNLVQGKSEHGLPLVDNCKDLSLAAGNNFDGTAPLEYHQQY 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,754,297
Number of Sequences: 28952
Number of extensions: 238964
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)