Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A07f
         (500 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.7  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   3.6  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   3.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   6.2  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   6.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 280 DLPSELDMPLDGEDEAEV 333
           D+   ++ P+DGED+ +V
Sbjct: 336 DVKRIINQPMDGEDQCDV 353


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 40  QWMSSVANDDEIKITEDLS 96
           QWM  V +  ++K+T ++S
Sbjct: 66  QWMQKVVSFHKLKLTNNIS 84


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 40  QWMSSVANDDEIKITEDLS 96
           QWM  V +  ++K+T ++S
Sbjct: 66  QWMQKVVSFHKLKLTNNIS 84


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 136 RQIHHPQLFRSS 101
           +Q HH QLF+S+
Sbjct: 16  QQFHHQQLFQSA 27


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 136 RQIHHPQLFRSS 101
           +Q HH QLF+S+
Sbjct: 16  QQFHHQQLFQSA 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.132    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,323
Number of Sequences: 336
Number of extensions: 1966
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)