Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A07f
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    30   0.17 
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    29   0.39 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    29   0.52 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   1.6  
SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit Arc4|...    25   6.4  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   8.4  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    25   8.4  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 64   DDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYE-MFDKVDKFLQSHTLRVKVPEEITK 240
            ++ I I++D+S+ +T  V+D+  A+  + +D   E   D ++K        VK  E +T 
Sbjct: 884  EENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTT 943

Query: 241  SAASEYVP 264
               +  +P
Sbjct: 944  LEETIEIP 951


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +1

Query: 76  KITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSAASE 255
           K+ E +   K   VE +      L++ P   M +KV K       + KV E     A +E
Sbjct: 94  KVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEKVSK-------KPKVSE-----AHNE 141

Query: 256 YVPRSLLTDLPSELDMPLDGEDE 324
            +    +  + +ELD+P+ G+DE
Sbjct: 142 EISPENVETIENELDLPVKGKDE 164


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 154  DPAYEMFDKVDKFLQSHTL----RVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGED 321
            D +Y  FD +    ++H +     V V   IT +   EY+ +   T L  ++ +  DG+D
Sbjct: 1018 DCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKD 1077

Query: 322  EAEVVE 339
              E+ E
Sbjct: 1078 REEIGE 1083


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 34   TLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLR 213
            TL   SS AND+  ++T  +++  T T + D+SA   +       + D  D  L+ +  R
Sbjct: 1232 TLDGNSSSANDNTQELTNVVNVALTSTGDLDDSA---IVSKLNQILSDFRDDLLEHNVRR 1288

Query: 214  VK-VPEEITKSAASEY 258
            V  V   I KSA   Y
Sbjct: 1289 VTIVGGRINKSAYPSY 1304


>SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit
           Arc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 234 YLLWNFHPKSMTLEKLVHFVEHFVGRI 154
           +L+ N+H + M   KLV F+  F+  +
Sbjct: 116 FLITNYHTEEMLKHKLVDFIIEFMEEV 142


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 238 KSAASEYVPRSLLTDL-PSELDMPLDGE 318
           ++A  +YVPR++L DL P  +D    G+
Sbjct: 53  EAAGGKYVPRAVLVDLEPGTMDAVKSGK 80


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 10  SVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESA 135
           S E V P ++ + +++   +   IT  + I+K   +ED+E A
Sbjct: 170 SNEIVYPESMPYQTNLYELNNTLITAAMEIIKDVVLEDNEKA 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.132    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,091
Number of Sequences: 5004
Number of extensions: 35880
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)