Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A07f
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 32 0.23
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116 30 1.2
12_02_0660 + 21636604-21636822 29 2.1
06_02_0036 - 10844876-10846173,10846490-10847012 29 2.8
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 28 4.8
09_02_0532 + 10320734-10320765,10321260-10321301,10321399-103214... 27 6.4
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357... 27 6.4
03_05_0799 + 27809301-27811550 27 6.4
11_06_0518 - 24512567-24512956 27 8.5
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 70 EIKITEDLSIV-KTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSA 246
E+ + E + V K + +D R KD + M K+ KF+++H +K EE+ +S
Sbjct: 126 EVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQ 185
Query: 247 A 249
A
Sbjct: 186 A 186
>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
Length = 886
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +1
Query: 103 KTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVK--------VPEEITKSAASEY 258
+TG V E ADPRLA A E+ D + L S + V+ +P+ ++K A+E
Sbjct: 708 ETGMVWRYEDADPRLAPLQAKELLDHLATVLASEPVAVRSGYKIVEVIPQGVSKGVAAEC 767
Query: 259 V 261
+
Sbjct: 768 I 768
>12_02_0660 + 21636604-21636822
Length = 72
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 52 SVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDK 189
+ + DEIK T D T + DDE+ DP+ ++ P E+ DK
Sbjct: 19 TTSRTDEIKATTDKVNDITTSHGDDETRDPQTSRGPEDEVVGPGDK 64
>06_02_0036 - 10844876-10846173,10846490-10847012
Length = 606
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 131 LPTLDWPRIRPTKCSTKWTSF 193
+ T D P++ PTKCST +SF
Sbjct: 74 IATKDLPKVTPTKCSTLCSSF 94
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 175 DKVDKFLQSHTLRVKVPEEITKSAASEY-VPRSLLTDLPSELDMPLDGEDEAEVVE 339
+ VD +++ +++ EIT+ E +P S+L+ L + +PLD +++ E V+
Sbjct: 385 EMVDNIIRTQAEKLQQASEITRVRLKEMDLPDSILS-LEGNITLPLDLKEDVEAVQ 439
>09_02_0532 +
10320734-10320765,10321260-10321301,10321399-10321435,
10322464-10322733
Length = 126
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 193 LQSHTLRVKVPEEITK--SAASEYVPRSLLTDLPSELDMPLDGEDEAEV 333
LQ+ +V+V + + +A +PR L +P+E D+ +GEDE EV
Sbjct: 3 LQTPKNKVRVSQTVGARVTAPRRRLPRYLYYRIPTEGDLLSNGEDEHEV 51
>06_03_0498 -
21432958-21434245,21434579-21435310,21435502-21435788,
21435955-21436026,21436130-21436264,21436887-21436925
Length = 850
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 178 KVDKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMP 306
K D L H LRV + ITK ++ R L D EL +P
Sbjct: 630 KKDGILCVHVLRVLIHLNITKLPEKYFIERWRLKDKNQELSVP 672
>03_05_0799 + 27809301-27811550
Length = 749
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 211 RVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVV 336
+V E I S +P S+ L+ PLDG D+A V+
Sbjct: 690 QVTTAESINSVGPSPLMPPSVSNGEGPSLNAPLDGHDQAAVI 731
>11_06_0518 - 24512567-24512956
Length = 129
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 175 DKVDKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGEDE 324
+++D ++ T+R+ P+EI + E + + L+D +L +P+D D+
Sbjct: 21 EEIDSYINYQTIRM--PDEIFPIVSKERLACTDLSDHKGDLPVPMDQIDD 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.132 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,355
Number of Sequences: 37544
Number of extensions: 236297
Number of successful extensions: 547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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