Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A07f
(500 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6) 31 0.40
SB_41914| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 29 1.6
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016) 29 2.8
SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_10773| Best HMM Match : TatC (HMM E-Value=0.31) 29 2.8
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 28 3.8
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 27 8.7
>SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)
Length = 348
Score = 31.5 bits (68), Expect = 0.40
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 88 DLSIVKTGTVEDDESADPRLAKDPAYEMFDK--VDKFLQSHTLRVKVPEEITKSAASEYV 261
D+SIV G V D +DPR+ KDP ++F VD FL + VP+ + S +
Sbjct: 34 DVSIVLNGAVAD---SDPRVLKDPKRKVFKTGGVDAFL------LTVPQSLDPSEEMKEA 84
Query: 262 PRSLLTDLP 288
P++ +P
Sbjct: 85 PKTKKEGIP 93
>SB_41914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 59 PTTTKLRSLKIFLS*RPEQLRMMNLPTLDWPRIRPTK 169
PT KL+++ + RP+ L + + P DWP +R T+
Sbjct: 5 PTGRKLQAVLHNNAIRPQSLTLCHQPNCDWPTVRLTQ 41
>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
Length = 822
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 22 VKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDP 159
+KP Q +SS+ DDEI TE+ I++T T + PR + P
Sbjct: 34 IKPEISQALSSLL-DDEIHGTEEEKIMRTATRSFTKGLKPRSSTHP 78
>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 43 WMSSVANDDEIKITEDLSIVKTGTVEDD 126
W++ V N+D +K+TE+ S+V T + D
Sbjct: 3 WINVVDNEDLVKLTEESSVVILATYDGD 30
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 202 HTLRVKVPEEITKSAASEYVPRSLLTDL-PSELD 300
H + V + +++AA +YVPR++L DL P+ +D
Sbjct: 954 HCKEIGVGSKTSEAAAGKYVPRAVLVDLEPTVID 987
>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
Length = 999
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGEDE 324
+K SH + K + A E + L P+ELD+P D EDE
Sbjct: 155 NKASASHYTQKKTTGSSSTEALREDISYMLEAVTPAELDVPTDNEDE 201
>SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 70 RRRWQPMTSTAGSSVS 23
RRRW P+TST G VS
Sbjct: 88 RRRWMPLTSTKGGPVS 103
>SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)
Length = 380
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 294 FRRQVSQERPWHVL*SSTFRYLLWNFHPKSMTLEKLVHFVEHFVGRILGQSRVGR 130
F+ + ++ W + +S + +LWN L V+F + + R+LGQ R+ R
Sbjct: 152 FKTKTLEDEEWGLTITS-LKNVLWNLRYPLFYLVGTVYFRKRHIERVLGQIRLTR 205
>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.7 bits (61), Expect = 2.8
Identities = 24/97 (24%), Positives = 37/97 (38%)
Frame = +1
Query: 49 SSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPE 228
S N+D++ T D K T DD+ D E F++++K P
Sbjct: 323 SQTVNEDKVPTTNDDDEDKASTTNDDDQDKASTTND--NEEFEEIEK---------NPPV 371
Query: 229 EITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVVE 339
E + SE + LL + E P ED+ + E
Sbjct: 372 EPAEYTISEEKRKDLLRQIIEEESTPSSDEDDGDYEE 408
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 55 VANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAY-EMFDKVDKFL 195
+ +DD+I +D++ T EDD +++ + +PA E+ D+ ++ L
Sbjct: 114 ITSDDDITSDDDITSDDDITSEDDITSEDNITTEPAIKEVIDRANELL 161
>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/97 (20%), Positives = 34/97 (35%)
Frame = +1
Query: 49 SSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPE 228
S N+D++ T D K T DD+ D + + + + P
Sbjct: 79 SQTVNEDKVPTTNDDDEDKASTTNDDDKDKASTTNDDDQDKASTTNDNEEFGEIEKNPPV 138
Query: 229 EITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVVE 339
E + SE + LL + E P +D+ + E
Sbjct: 139 EPAEYPISEDKRKDLLRQIIEEERTPSSDDDDGDYEE 175
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.1 bits (57), Expect = 8.7
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 103 KTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSAASEYVPRSLL-T 279
K TVE +E A + E K+D L+S + +V E A SE R+
Sbjct: 2682 KAATVESEEERVYTEATEHLVEDEAKLDSSLESRSFEEEVEEMEVDEALSESAFRAQSPR 2741
Query: 280 DLPSELDMPLDGEDEAEV 333
+ S D+ D ED+A +
Sbjct: 2742 ETASPPDLKKDEEDKAVI 2759
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.132 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,270,182
Number of Sequences: 59808
Number of extensions: 270891
Number of successful extensions: 536
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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