Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A07f
         (500 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012596-1|AAH12596.3|   78|Homo sapiens actin related protein 2...    30   5.2  
AF019888-1|AAB71548.1|  168|Homo sapiens Arp2/3 complex 20 kDa s...    30   5.2  
AF006087-1|AAB64192.1|  168|Homo sapiens p20-Arc protein.              30   5.2  
BC032762-1|AAH32762.1|  571|Homo sapiens OPTN protein protein.         29   6.9  
BC013876-1|AAH13876.1|  577|Homo sapiens optineurin protein.           29   6.9  
AL355355-6|CAI16550.1|  571|Homo sapiens optineurin protein.           29   6.9  
AL355355-5|CAI16549.1|  577|Homo sapiens optineurin protein.           29   6.9  
AF420373-1|AAL76329.1|  577|Homo sapiens optineurin isoform 3 pr...    29   6.9  
AF420372-1|AAL76328.1|  577|Homo sapiens optineurin isoform 2 pr...    29   6.9  
AF420371-1|AAL76327.1|  577|Homo sapiens optineurin isoform 1 pr...    29   6.9  
AF283527-1|AAG00497.1|  577|Homo sapiens FIP2 protein.                 29   6.9  
AF061034-2|AAC16047.1|  520|Homo sapiens FIP2 protein.                 29   6.9  
AF061034-1|AAC16046.1|  577|Homo sapiens FIP2 protein.                 29   6.9  

>BC012596-1|AAH12596.3|   78|Homo sapiens actin related protein 2/3
           complex, subunit 4, 20kDa protein.
          Length = 78

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 234 YLLWNFHPKSMTLEKLVHFVEHFVGRI 154
           +L+ NFH + M   KLV FV HF+  I
Sbjct: 26  FLITNFHTEQMYKHKLVDFVIHFMEEI 52


>AF019888-1|AAB71548.1|  168|Homo sapiens Arp2/3 complex 20 kDa
           subunit protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 234 YLLWNFHPKSMTLEKLVHFVEHFVGRI 154
           +L+ NFH + M   KLV FV HF+  I
Sbjct: 116 FLITNFHTEQMYKHKLVDFVIHFMEEI 142


>AF006087-1|AAB64192.1|  168|Homo sapiens p20-Arc protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 234 YLLWNFHPKSMTLEKLVHFVEHFVGRI 154
           +L+ NFH + M   KLV FV HF+  I
Sbjct: 116 FLITNFHTEQMYKHKLVDFVIHFMEEI 142


>BC032762-1|AAH32762.1|  571|Homo sapiens OPTN protein protein.
          Length = 571

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 388 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 426


>BC013876-1|AAH13876.1|  577|Homo sapiens optineurin protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 394 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 432


>AL355355-6|CAI16550.1|  571|Homo sapiens optineurin protein.
          Length = 571

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 388 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 426


>AL355355-5|CAI16549.1|  577|Homo sapiens optineurin protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 394 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 432


>AF420373-1|AAL76329.1|  577|Homo sapiens optineurin isoform 3
           protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 394 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 432


>AF420372-1|AAL76328.1|  577|Homo sapiens optineurin isoform 2
           protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 394 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 432


>AF420371-1|AAL76327.1|  577|Homo sapiens optineurin isoform 1
           protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 394 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 432


>AF283527-1|AAG00497.1|  577|Homo sapiens FIP2 protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 394 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 432


>AF061034-2|AAC16047.1|  520|Homo sapiens FIP2 protein.
          Length = 520

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 337 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 375


>AF061034-1|AAC16046.1|  577|Homo sapiens FIP2 protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 184 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDM 303
           +K LQ H   +K  EE+T+   SE V R++L +L  +L++
Sbjct: 394 NKLLQEHNNALKTIEELTRK-ESEKVDRAVLKELSEKLEL 432


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.313    0.132    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,321,884
Number of Sequences: 237096
Number of extensions: 1266014
Number of successful extensions: 2278
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2277
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)