Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A07f
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR...    28   4.1  
At4g28560.1 68417.m04085 leucine-rich repeat family protein (fra...    27   5.4  
At3g17710.1 68416.m02260 F-box family protein contains F-box dom...    27   5.4  
At2g15090.1 68415.m01720 fatty acid elongase, putative similar  ...    27   7.1  

>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1215

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 492  VLQSDEG*RQGNENRSFEFKTQQERQDNLLDETVFALD---PQWFRE 361
            VL  + G   GNE R   + T  ERQ++ +  T  +L+   P++ RE
Sbjct: 1114 VLADNGGREAGNEGRMEVYMTIMERQNDFITSTYVSLNHIFPEFLRE 1160


>At4g28560.1 68417.m04085 leucine-rich repeat family protein
           (fragment) contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611;
          Length = 450

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query: 94  SIVKTGTVEDDESADPRLAKDPAYE--MFDKVDKFLQSHTLRVKVPEEITKS 243
           +++ +   +DDE+A P+LA DP+ +  ++  +D    + + R   P++I  S
Sbjct: 18  TLITSQQSDDDENASPQLALDPSEQEAVYRVLDSVNSAISWRTIFPDDICAS 69


>At3g17710.1 68416.m02260 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 368

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 116 LRMMNLPTLDWPRIRPTKCSTKWTSFSKVILL 211
           ++ M LPT + P +  T C + +  F K I++
Sbjct: 286 IKFMTLPTTNLPNLDDTYCCSSYFIFDKTIIM 317


>At2g15090.1 68415.m01720 fatty acid elongase, putative similar  to
           fatty acid elongase 1 [GI:881615]
          Length = 481

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 462 GNENRSFEFKTQQERQDNLLDETV 391
           G+++RSFE  TQ+E +D ++  T+
Sbjct: 294 GSDDRSFECATQEEDEDGIIGVTL 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.132    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,037
Number of Sequences: 28952
Number of extensions: 193162
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)