Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A05f
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0806 - 25404943-25404954,25405660-25405725,25406226-254062...    27   3.9  

>01_05_0806 -
           25404943-25404954,25405660-25405725,25406226-25406285,
           25407019-25407121,25408032-25408150
          Length = 119

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 270 IPXGSAXSLNT*QTQXPFRVRGYYLCFKTGQPDGLAMDL 386
           +P  +  S++    + PF      +CF  GQPD +  D+
Sbjct: 26  VPLLAVASISLVNNRGPFPDLPLAICFSEGQPDSIVQDI 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,172,265
Number of Sequences: 37544
Number of extensions: 104256
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)