Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A05f
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deamin...    27   4.6  
AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical...    27   4.6  
AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical...    27   4.6  

>U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deaminase
           protein 1 protein.
          Length = 158

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 193 LFETNTYSYYFYPFLTRSLEEHER 264
           + ET TY    Y F  +SL++HE+
Sbjct: 120 IIETTTYELLPYAFTPKSLDDHEK 143


>AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5b protein.
          Length = 574

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 280 VPLSRLTRDKLSXLLG*GDIIYALKLDNRMAWXW 381
           VPL ++    L+     GD  Y +K DN + W W
Sbjct: 434 VPLVKVADFGLARKTDVGDENYVMKTDNMLPWKW 467


>AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5a protein.
          Length = 618

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 280 VPLSRLTRDKLSXLLG*GDIIYALKLDNRMAWXW 381
           VPL ++    L+     GD  Y +K DN + W W
Sbjct: 478 VPLVKVADFGLARKTDVGDENYVMKTDNMLPWKW 511


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,750,898
Number of Sequences: 27780
Number of extensions: 110388
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)