Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    27   2.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   6.8  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.0  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   9.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   9.0  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    25   9.0  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 483 IKSSIPIDLLFDLYTHIYWLSCEVECLVTFPENLQ 379
           ++S   IDLLF    H+++  CE E +V    +L+
Sbjct: 694 LRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHLK 728


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -1

Query: 449 TSIPTSIGSRVKWSASSPFRRTCNTSTSFNQPMS*GCPPPAGKRIVFSKVIWKPSNNDVF 270
           +S PTS  S +  S+SSP   + +++TS ++  S      +      S  +   S++   
Sbjct: 333 SSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSR 392

Query: 269 P*STI--GSLVGSHRST 225
           P S+    S + SH+S+
Sbjct: 393 PASSSSHSSSLSSHKSS 409


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 192 LYLMVYFNLHKLVTIKRVVIFFLTD 118
           L L+++FNL K    KR+++  L D
Sbjct: 10  LSLVIWFNLKKRTDKKRIIVLVLGD 34


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 510 MLARMLLHMIKSSIPIDLLFDLYTHIYWLSC 418
           +L  ML+   ++  P D+ F LYTH    SC
Sbjct: 147 LLPCMLVRFYEAP-PYDIAFSLYTHFSIYSC 176


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 181 HQIKLLRFLRKYQSKVLRCEPTK-EPIVDYGKTSLFEG 291
           HQI    FLR+ +S+VL   PTK E I+    T + +G
Sbjct: 761 HQILKPFFLRRVKSEVLDNFPTKVEVIIPLSMTPVQKG 798


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 444 YTHIYWLSCEVECLVTFPENLQHFNIIQPADVMRLS 337
           YTHI    C  +C++T  ++ Q   + QPA++++ S
Sbjct: 290 YTHI----CR-KCVITILQSYQQLIVDQPANLLKFS 320


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 246 GW-LTPQYFRLILSQESEKLYLMVYFNLHKLVTIKR 142
           GW +T  YF  ++S+E+    LM   N+H  + + R
Sbjct: 322 GWGITRAYFNSLVSKETVGANLMTIHNVHFQLQLMR 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,016
Number of Sequences: 5004
Number of extensions: 44257
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)