Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0913 + 22540078-22540166,22540280-22540420,22541151-225412...    31   0.74 
01_01_0125 - 1154626-1154685,1155100-1155195,1155578-1155652,115...    29   2.3  
01_01_1218 + 9846644-9847837                                           28   4.0  
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195           27   6.9  
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072...    27   9.1  
07_01_1023 + 8840754-8842988,8843189-8843362                           27   9.1  

>08_02_0913 +
           22540078-22540166,22540280-22540420,22541151-22541281,
           22542278-22542460,22542555-22543195
          Length = 394

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 24/96 (25%), Positives = 42/96 (43%)
 Frame = +1

Query: 127 EKNNHTFYSYKFMQIKINHQIKLLRFLRKYQSKVLRCEPTKEPIVDYGKTSLFEGFQITL 306
           +K    F  Y+  + ++NH++ L    R    + +   P    + +Y      +G  +  
Sbjct: 11  QKQAPLFSPYQMPRFRLNHRVVLAPMTR---CRAIGGVPGPA-LAEYYAQRTTQGGLLIS 66

Query: 307 ENTILFPAGGGQPHDIGWLNDVEVLQVLRKGDEALH 414
           E T++ PAG G PH  G  N  E     +K  +A+H
Sbjct: 67  EGTVVSPAGPGFPHVPGIYNQ-EQTDAWKKVVDAVH 101


>01_01_0125 -
           1154626-1154685,1155100-1155195,1155578-1155652,
           1155729-1155831,1155986-1156078,1156774-1156886,
           1156981-1157124,1157247-1157357
          Length = 264

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 298 ITLENTILFPAGGGQPHDIG 357
           + +++T+ +P GGGQP D G
Sbjct: 45  VLVDSTVFYPQGGGQPADTG 64


>01_01_1218 + 9846644-9847837
          Length = 397

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 343 PHDIGWLNDVEVLQVLRKGDEALH 414
           PH IG L D++ L V   GD+  H
Sbjct: 120 PHGIGQLTDLQTLTVFNTGDDLSH 143


>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
          Length = 767

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -3

Query: 213 LSQESEKLYLMVYFNLHKLVTI----KRVVIFFLTDSLERLFQRNLN**VSSRGSNLTTL 46
           L +E +     +Y    KLV I    K ++ +F ++ +E + QR +   V   G   TTL
Sbjct: 156 LCREIDPRLPALYVEKEKLVGIQGPMKEIINWFGSEEVEPIGQRKIVSIVGQGGLGKTTL 215

Query: 45  PTQTYHRIE 19
             Q Y +I+
Sbjct: 216 ANQVYQKIK 224


>10_08_0425 -
           17806117-17806401,17806862-17806984,17807076-17807222,
           17807307-17807450,17808557-17808668,17808762-17808898,
           17809016-17809156,17810921-17811004,17811275-17811742,
           17811858-17811936,17812494-17812506,17813884-17814460,
           17814502-17814774,17814899-17815045,17815354-17815413,
           17816124-17816510
          Length = 1058

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 452 LTSIPTSIGSRVKWSASSPFRRTCNTSTSFNQP 354
           + S P S+  R    ++SPF +T  + T+F QP
Sbjct: 360 ILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQP 392


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 175 INHQIKLLRFLRKYQSKVLRCEPTKEPIVD 264
           + H+++   FL K+Q ++L C   K  ++D
Sbjct: 744 VKHELEEEHFLAKHQEEILNCNQRKLEVMD 773


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,083,480
Number of Sequences: 37544
Number of extensions: 282343
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)