Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25494| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   5e-22
SB_44198| Best HMM Match : PIG-L (HMM E-Value=1.4e-32)                 29   3.1  
SB_33644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_14687| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_14686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)               28   5.4  
SB_2330| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_52739| Best HMM Match : GCV_H (HMM E-Value=2)                       27   9.4  

>SB_25494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score =  101 bits (241), Expect = 5e-22
 Identities = 46/100 (46%), Positives = 68/100 (68%)
 Frame = +1

Query: 202 FLRKYQSKVLRCEPTKEPIVDYGKTSLFEGFQITLENTILFPAGGGQPHDIGWLNDVEVL 381
           FL++++++V+ C+P K+   D       + F++ LE+TILFP GGGQP D G +N +EVL
Sbjct: 48  FLKEFKTEVVSCKPAKQNKKD-------DVFEVVLEDTILFPEGGGQPDDKGMINGIEVL 100

Query: 382 QVLRKGDEALHFTREPIDVGIEVKQKVNWNRRFDHMQQHS 501
           QV R+G +A+H   + ID G +    ++W RRFDHMQQHS
Sbjct: 101 QVFRRGRQAVHVLSQHIDEGAQASLVLDWERRFDHMQQHS 140


>SB_44198| Best HMM Match : PIG-L (HMM E-Value=1.4e-32)
          Length = 233

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 181 HQIKLLRFLRKYQSKVLRCEPTKEPIVDYGKTS 279
           HQI +++ +R+Y+  ++ C    +  +D+GK S
Sbjct: 84  HQIAVIKKIRQYKPDIVLCNAIDDRHIDHGKGS 116


>SB_33644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -1

Query: 437 TSIGSRVKWSASSPFRRTCNTSTSF---NQPMS*GCPPPAGKRIVFSKVIWKPSNNDVFP 267
           TS+  R+  S +S FR   NT++S    N+ M        GKR+   K    PSNN V P
Sbjct: 404 TSMSMRLTKSDNSTFRGRANTTSSVVPANEAMG-----MQGKRLAHKKKSPSPSNNAVVP 458


>SB_14687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -3

Query: 189 YLMVYFNL--HKLVTIKRVVIFFL 124
           YLMV  +L  H+LVT +RV++F L
Sbjct: 260 YLMVLLHLRYHELVTTRRVIVFLL 283


>SB_14686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -3

Query: 189 YLMVYFNL--HKLVTIKRVVIFFL 124
           YLMV  +L  H+LVT +RV++F L
Sbjct: 136 YLMVLLHLRYHELVTTRRVIVFLL 159


>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
          Length = 284

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 367 DVEVLQVLRKGDEALHFTREPIDVGIEVKQK-VNWNRRFDHMQ 492
           DVE  +  RKG +A+ F +E  D   E+++K +N  +     Q
Sbjct: 193 DVEPKRQKRKGGDAIEFLKERADKNSELREKELNMKKEMQQQQ 235


>SB_2330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +1

Query: 148 YSYKFMQIKIN---HQIKLLRFLRKYQSKVLRCEPTKEPIVDYGKTSL-FEGFQITLENT 315
           YS K +Q  +    + +K L++  KY+   ++CE T    V Y  T++ +EG  +  E T
Sbjct: 48  YSMKVLQYSVKALQYSMKALQYSMKYKGIAVQCEGT---AVQYEGTAVQYEGTAVRYEGT 104


>SB_52739| Best HMM Match : GCV_H (HMM E-Value=2)
          Length = 561

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 187 IKLLRFLRKYQSKVLRCEPTKEPIVDYGKTSLFEGFQITLENT 315
           +KLLR+ R  Q++ L+        V  G + L++ + + L  T
Sbjct: 320 VKLLRYFRLNQAQKLQVSTVDSNAVGLGDSKLYQSYFVCLRET 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,713
Number of Sequences: 59808
Number of extensions: 323570
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)