Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical p...    30   0.87 
AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA s...    30   0.87 
Z66516-2|CAA91360.1|  418|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z70682-8|CAA94583.2|  385|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U97013-4|AAB52339.1|  968|Caenorhabditis elegans Alanyl trna syn...    27   8.1  

>Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical
           protein W02B12.6a protein.
          Length = 793

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
 Frame = +1

Query: 289 GFQITLENTILFPAGGGQPHDIGWLN-------DVEVLQVLRKGDEALHFTRE--PIDVG 441
           GF + LE    +   GGQ  D G L        +VE  + +  G   + F R   PI   
Sbjct: 517 GF-LVLEECQFYGEQGGQTSDTGHLLIDGREVFEVENAKKIAGGAVTVLFGRALLPIRRD 575

Query: 442 IEVKQKVNWNRRFDHMQQHSGQHLLS 519
           + V+QK++  RR   M+ HS  HLL+
Sbjct: 576 LRVEQKLDETRREGVMRAHSATHLLN 601


>AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA
           synthetase protein.
          Length = 793

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
 Frame = +1

Query: 289 GFQITLENTILFPAGGGQPHDIGWLN-------DVEVLQVLRKGDEALHFTRE--PIDVG 441
           GF + LE    +   GGQ  D G L        +VE  + +  G   + F R   PI   
Sbjct: 517 GF-LVLEECQFYGEQGGQTSDTGHLLIDGREVFEVENAKKIAGGAVTVLFGRALLPIRRD 575

Query: 442 IEVKQKVNWNRRFDHMQQHSGQHLLS 519
           + V+QK++  RR   M+ HS  HLL+
Sbjct: 576 LRVEQKLDETRREGVMRAHSATHLLN 601


>Z66516-2|CAA91360.1|  418|Caenorhabditis elegans Hypothetical
           protein W03C9.2 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 214 YQSKVLRCEPTKEPIVDYGKTSLFEG-FQITLENTILF 324
           YQ  +++CE     +++  K S+F+G F   L+  ++F
Sbjct: 240 YQKLMVKCEENSNLLIEKSKKSIFDGIFMENLKKKLIF 277


>Z70682-8|CAA94583.2|  385|Caenorhabditis elegans Hypothetical
           protein F08G5.1 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -1

Query: 431 IGSRVKWSASSPFRRTCNTSTSFNQPMS*GCPPPAGKRIVFSKVIWKPSNNDVFP*STIG 252
           IG  VK SA+     T +T+   +  M     P       FS+ ++ P N      ST+ 
Sbjct: 150 IGGSVKKSAARNLSHTYSTNIGESSRM-----PALTANEFFSQPVYNPYNRPASSASTVS 204

Query: 251 SLVGSHRSTL 222
           S +GS  S L
Sbjct: 205 SSIGSAYSVL 214


>U97013-4|AAB52339.1|  968|Caenorhabditis elegans Alanyl trna
           synthetase protein 2 protein.
          Length = 968

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
 Frame = +1

Query: 298 ITLENTILFPAGGGQPHDIGWL-------NDVEVLQV-LRKGDEALHFTRE-PIDVGIEV 450
           I L+ T  +   GGQ +D+G L       N+  V    +R G   L  + E    VG +V
Sbjct: 531 ILLDRTNFYAEQGGQIYDVGVLTKVNDESNEFNVSNCQVRGGYIVLVGSAEGSFSVGDQV 590

Query: 451 KQKVNWNRRFDHMQQHSGQHLLS 519
            ++ + +R+   M+ H+G H+L+
Sbjct: 591 NERFDEDRKQLIMKNHTGTHVLN 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,070,242
Number of Sequences: 27780
Number of extensions: 248121
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)