Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16565.1 68416.m02118 alanyl-tRNA synthetase-related low simi...    30   1.1  
At1g45248.2 68414.m05191 hypothetical protein Since this genomic...    29   2.5  
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    27   7.7  

>At3g16565.1 68416.m02118 alanyl-tRNA synthetase-related low
           similarity to SP|Q56273 Alanyl-tRNA synthetase (EC
           6.1.1.7) (Alanine--tRNA ligase) (AlaRS) {Thiobacillus
           ferrooxidans}
          Length = 271

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 298 ITLENTILFPAGGGQPHDIG 357
           + LE+T+  P GGGQP D G
Sbjct: 36  LILESTVFHPQGGGQPSDTG 55


>At1g45248.2 68414.m05191 hypothetical protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 185

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 244 TKEPIVDYGKTSLFEGFQITLENTILFPAGGGQPHDIGWLNDVEVLQVLRKGDEALHFTR 423
           T E ++D    S F+  +    +      GG Q    GWL+  E     +  DE +  T 
Sbjct: 104 TNEAVMD-SSPSAFQFVEAPPVDYAHHSVGGAQSSHCGWLSSEEETDPDKDSDEMIQLTP 162

Query: 424 EPI 432
           EP+
Sbjct: 163 EPL 165


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 286 EGFQITLENTILFPAGGGQPHDIGWLNDVEV 378
           +GF+I++ +T    +GG  P DI  L DV V
Sbjct: 185 DGFRISVSSTPSCSSGGSGPDDIESLGDVYV 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,347,978
Number of Sequences: 28952
Number of extensions: 228097
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)