Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 157 7e-40
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 87 2e-18
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 84 1e-17
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 80 2e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 66 3e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 3e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 66 4e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 63 3e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 60 2e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 58 1e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 2e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 54 1e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 2e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 2e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 48 6e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 48 1e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 1e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 2e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 40 3e-04
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 1.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 2.2
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 3.0
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 26 3.0
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 3.9
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 25 6.8
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 9.0
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 157 bits (382), Expect = 7e-40
Identities = 80/172 (46%), Positives = 114/172 (66%)
Frame = +1
Query: 1 DKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEAL 180
D K Q+ ++ + + N + + E ++ + + DPNSPL+SVK+FE L
Sbjct: 60 DAKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEEL 119
Query: 181 HLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVD 360
LKP LLKG+Y+M F PSKIQE ALP LL++PP+NMI QSQSGTGKTAAF L MLSRVD
Sbjct: 120 ELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVD 179
Query: 361 SNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 516
++ PQ +CL+P+ ELA Q +V +M K+ E+K + ++ + +P+G+KI
Sbjct: 180 ASVPKPQAICLAPSRELARQIMDVVTEMGKY-TEVKTAFGIK-DSVPKGAKI 229
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 86.6 bits (205), Expect = 2e-18
Identities = 41/95 (43%), Positives = 66/95 (69%)
Frame = +1
Query: 160 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 339
+ TF+ ++LKP LL+G+YA GF PS IQ+ A+ +L + ++++AQ+QSGTGKTA F +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSI 75
Query: 340 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKM 444
++L ++D++ Q L L+PT ELA Q +V +
Sbjct: 76 SVLQKIDTSLKQCQALILAPTRELAQQIQKVVVAL 110
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 84.2 bits (199), Expect = 1e-17
Identities = 42/94 (44%), Positives = 63/94 (67%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
FE +LK LL G++ GF PS IQE ++P L+ ++++A++++GTGKTAAFV+ L
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG--RDILARAKNGTGKTAAFVIPSL 103
Query: 349 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 450
+VD+ K+ Q L L PT ELA+QT +V + K
Sbjct: 104 EKVDTKKSKIQTLILVPTRELALQTSQVCKTLGK 137
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 79.8 bits (188), Expect = 2e-16
Identities = 40/92 (43%), Positives = 60/92 (65%)
Frame = +1
Query: 157 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 336
+V +FE ++LK +LL+G+YA G+ PS +Q A+ + +++IAQ+QSGTGKTA F
Sbjct: 19 AVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG--RDVIAQAQSGTGKTATFS 76
Query: 337 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEV 432
+ +L +D + Q L LSPT ELA+Q V
Sbjct: 77 IGILQSIDLSVRDTQALILSPTRELAVQIQNV 108
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 66.1 bits (154), Expect = 3e-12
Identities = 37/99 (37%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Frame = +1
Query: 166 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 345
+F++++L +LKG+ +GF P++IQ+ +P L ++++ + +G+GKTAAF++ +
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPI 317
Query: 346 LSR-VDSNKNYP--QVLCLSPTYELAIQTGEVAAKMAKF 453
L R + K P +VL L PT ELA+Q VA K+A F
Sbjct: 318 LERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF 356
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 66.1 bits (154), Expect = 3e-12
Identities = 34/100 (34%), Positives = 56/100 (56%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
F LKP LL+ + GF PS++Q+ +P + +++ Q++SG GKTA FVL+ L
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT--DVLCQAKSGMGKTAVFVLSTL 110
Query: 349 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIK 468
+++ VL L T ELA Q A+ +K+ P+++
Sbjct: 111 QQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVR 150
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 65.7 bits (153), Expect = 4e-12
Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
F+++ L LL+ ++ GF AP+ IQ +P LL ++++ +++G+GKTAAFV+ M+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG--RDVVGMARTGSGKTAAFVIPMI 128
Query: 349 SRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAK 450
+ S + + L LSP ELA+QT +V +K
Sbjct: 129 EHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK 164
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 62.9 bits (146), Expect = 3e-11
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Frame = +1
Query: 157 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 336
S KTF +L P L + ++ F P+ +Q +P LA ++++AQ+++G+GKTAA++
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIP--LALEGKDLVAQARTGSGKTAAYL 69
Query: 337 LAML------SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC 456
+ +L ++D N+ L L PT ELA Q V K+ FC
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFC 115
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 60.1 bits (139), Expect = 2e-10
Identities = 42/152 (27%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Frame = +1
Query: 16 QETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRK-DPNSPLYS-VKTFEALHLK 189
Q+ D + + AD + ++ + L D +Q+ + N+ S ++ F L L
Sbjct: 38 QDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLS 97
Query: 190 PNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK 369
N+ K + MGF ++IQ+ ++P LLA ++++ +++G+GKT AF++ + + + K
Sbjct: 98 ENIQKAIKEMGFETMTEIQKRSIPPLLAG--RDVLGAAKTGSGKTLAFLIPTIEMLYALK 155
Query: 370 NYPQ----VLCLSPTYELAIQTGEVAAKMAKF 453
P+ V+ +SPT ELA+Q VA ++ K+
Sbjct: 156 FKPRNGTGVIIISPTRELALQIFGVAKELLKY 187
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 57.6 bits (133), Expect = 1e-09
Identities = 32/89 (35%), Positives = 53/89 (59%)
Frame = +1
Query: 163 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 342
KTF+ L + L + +GF P+ IQ+ A+P +L +++I +Q+G+GKTAAF L
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNK--RDVIGLAQTGSGKTAAFALP 103
Query: 343 MLSRVDSNKNYPQVLCLSPTYELAIQTGE 429
++ + +N + + L+PT ELA Q E
Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQISE 132
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 56.4 bits (130), Expect = 2e-09
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Frame = +1
Query: 136 DPNSP--LYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQS 309
DP S L + F+ L + L +G+ + P+ IQ P LLA ++++ +++
Sbjct: 156 DPKSSENLLPILQFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAG--RDVVGIAET 211
Query: 310 GTGKTAAF---VLAMLSRVDSNKNYPQVLCLSPTYELAIQTGE 429
G+GKT AF L L+ + NK+ P+VL +SPT ELAIQT E
Sbjct: 212 GSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYE 254
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 54.4 bits (125), Expect = 1e-08
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Frame = +1
Query: 160 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 339
V TFE +LK V +GF AP+ IQ+ A P +A ++M+ S +G+GKT ++ L
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWP--MAMSGRDMVGISATGSGKTLSYCL 178
Query: 340 AMLSRVD-----SNKNYPQVLCLSPTYELAIQTGEVAAKMAK 450
+ ++ S + P VL L+PT ELA+Q + K K
Sbjct: 179 PAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGK 220
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 53.6 bits (123), Expect = 2e-08
Identities = 35/107 (32%), Positives = 58/107 (54%)
Frame = +1
Query: 163 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 342
K+F L + P L+ + A+ P+ IQE + +L +N I +++G+GKTAAF L
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEG--RNCIGGAKTGSGKTAAFALP 64
Query: 343 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAV 483
++ + + + L L+PT ELAIQ E + A + LK+A+
Sbjct: 65 IIEKWSKDPSGIFALILTPTRELAIQIDE---QFAALGANLNLKHAL 108
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.6 bits (123), Expect = 2e-08
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
Frame = +1
Query: 4 KKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALH 183
+K ++ D DDVP + MK +++ +I I+ D +PL + +E
Sbjct: 202 EKRAKKIDWDDVPWREKPLEA---MKPRDWRILKEDYNISIKGDDLPNPL---RNWEEAG 255
Query: 184 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV-- 357
L +LK + + + PS IQ A+P LL +++I +++G+GKTAAF++ ++ +
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQR--KDLIGIAETGSGKTAAFIIPLIIAISK 313
Query: 358 -----DSNKNY-PQVLCLSPTYELAIQTGEVAAKMAK 450
+SN + P + L+PT ELA Q K A+
Sbjct: 314 LPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAE 350
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.4 bits (110), Expect = 6e-07
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Frame = +1
Query: 166 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 345
+F+++++ L V A GF + +Q A+P L + ++++ ++ +G+GKT A++L
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKN--KDLVVEAVTGSGKTLAYLLPC 59
Query: 346 LSRV---DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE 462
+V D+++ L ++PT ELA Q V ++ + P+
Sbjct: 60 FDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPD 101
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 47.6 bits (108), Expect = 1e-06
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Frame = +1
Query: 172 EALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLS 351
E L + GF + +Q+ L + + +N + Q+++GTGKT AF+L
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNE-ENAVVQAKTGTGKTLAFLLVAFK 99
Query: 352 RVDSNK---NYPQV--LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 504
V K N ++ + LSPT ELA+Q E A K+ + I++ YA+ G R
Sbjct: 100 DVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMR 154
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 44.0 bits (99), Expect = 1e-05
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 18/117 (15%)
Frame = +1
Query: 160 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 339
V F + L +LL+ + G+ P+ +Q+ ++P + + ++++A +Q+G+GKTA F+
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSG--RDLMACAQTGSGKTAGFLF 225
Query: 340 AMLS----------RVDSN--------KNYPQVLCLSPTYELAIQTGEVAAKMAKFC 456
+LS VD + K YP L L+PT EL Q E + KFC
Sbjct: 226 PILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE---ESRKFC 279
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 43.2 bits (97), Expect = 2e-05
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Frame = +1
Query: 61 DTSLLMKIIRQGLVESKL-DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVY-AMGFNAP 234
D+ + + Q L ++++ +I ++ N+P+ + F + L L + M +AP
Sbjct: 104 DSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTN-FAGVQLDTQLADHLNNKMNISAP 162
Query: 235 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR-VDSNKNYP------QVLCL 393
+ IQ LP LL ++ ++Q+G+GKT A++L ++ R + KN + +
Sbjct: 163 TAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIM 222
Query: 394 SPTYELAIQTGEVAAKM 444
+PT EL Q VA K+
Sbjct: 223 APTRELCQQIYNVANKL 239
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 39.5 bits (88), Expect = 3e-04
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Frame = +1
Query: 235 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK----NYPQVLCLSPT 402
++IQ+ +P+ L ++++ +++G+GKT AF++ ++ + K + L +SPT
Sbjct: 63 TEIQKQCIPSALKG--RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPT 120
Query: 403 YELAIQTGEVAAKMAK 450
ELAIQT E K+ +
Sbjct: 121 RELAIQTFETLVKIGR 136
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 292 IAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL 471
I + G GKT + +D N N P L ++P + E AKFCP++K+
Sbjct: 409 ILADEMGLGKTCQTIAFFSLLMDKNINGPH-LVIAPASTMENWLRE----FAKFCPKLKI 463
Query: 472 K 474
+
Sbjct: 464 E 464
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 22 TDSDD-VPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKD 138
+DSDD +PDTP+A+ + + LVE + I+ KD
Sbjct: 872 SDSDDQIPDTPSASANQGIFPRLIANLVERRRQIKGLLKD 911
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 368 LLESTLLNIAKTKAAVFPVPDCDW 297
++E +LLN A A FP DW
Sbjct: 290 MMEQSLLNFAYNSAGAFPWESLDW 313
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 157 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 294
S F A LK + + A N P+ ++ T + T+L P QN++
Sbjct: 357 SENPFIAHELKQTSVNEITAHVINEPASLKLTTISTILHAPLQNLL 402
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 217 MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 363
+ + ++IQ P + +NM+ + +G GKT +LAML + +
Sbjct: 273 LSYQTLNRIQSLVYP-IAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 139 PNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQS 309
P+SPLY + A L+P++ + FN P + LA P + A S++
Sbjct: 243 PDSPLYYRRATIASDLRPSVYQHPQLYDFNRPESLSGQLDDESLARMPYSPNAVSRN 299
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 160 VKTFEALHLKPNLLKGVYAMGFNA 231
+++FE L++ NL+KG + + F A
Sbjct: 199 MESFEKLYIDKNLVKGAWIVSFYA 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,981
Number of Sequences: 5004
Number of extensions: 38254
Number of successful extensions: 129
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -