Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       59   3e-11
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.088

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 58.8 bits (136), Expect = 3e-11
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
 Frame = +1

Query: 40  PDTPNAADTSLLMKIIRQGLVESKLD-IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYA 216
           P+ PN  + SL    +  G+   K D I++     N P   +++FEA  L+  +L  +  
Sbjct: 156 PELPND-EKSLFENGVEIGINFDKYDNIQVNVSGDNVP-QPIESFEAAGLRNIVLDNIKK 213

Query: 217 MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR---------VDSNK 369
            G+  P+ +Q+ ALP ++    ++++A +Q+G+GKTAAF + +++          V S  
Sbjct: 214 SGYKKPTPVQKHALPIIMNG--RDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTY 271

Query: 370 NYPQVLCLSPTYELAIQTGEVAAKMA 447
             PQV+ +SPT EL IQ  +   K +
Sbjct: 272 CEPQVVIVSPTRELTIQIWQQIVKFS 297


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 25  DSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLL 201
           DSDD  D  N  D S     IR  +++   + EI R   NSPL  ++  + LHL+ N +
Sbjct: 195 DSDDGSDG-NDGDESSCRADIR--ILDLSRN-EITRLQENSPLLDLRQLQELHLQRNAI 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,387
Number of Sequences: 438
Number of extensions: 2507
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)