Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309A02f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 107 6e-24
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 87 7e-18
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 87 7e-18
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 82 2e-16
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 82 3e-16
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 82 3e-16
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 73 1e-13
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 72 3e-13
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 71 4e-13
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 71 5e-13
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 70 1e-12
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 69 3e-12
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 65 3e-11
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 64 5e-11
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 63 1e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 63 1e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 62 2e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 62 2e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 58 5e-09
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 57 6e-09
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 57 6e-09
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 57 6e-09
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 57 8e-09
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 57 8e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 57 8e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 56 1e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 56 2e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 55 3e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 55 3e-08
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 54 6e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 54 8e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 52 3e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 51 5e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 51 5e-07
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 51 5e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 50 7e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 50 1e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 50 1e-06
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 50 1e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 50 1e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 49 2e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 48 4e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 48 5e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 46 1e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 46 1e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 2e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 44 6e-05
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 43 1e-04
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 43 1e-04
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 41 6e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 6e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 40 8e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 39 0.002
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 38 0.005
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 37 0.007
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 36 0.012
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 36 0.012
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 34 0.067
At3g60040.1 68416.m06705 F-box family protein contains a novel d... 31 0.47
At5g15570.1 68418.m01823 expressed protein hypothetical protein ... 31 0.62
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 30 0.82
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 30 0.82
At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserin... 30 1.1
At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserin... 30 1.1
At1g50360.1 68414.m05645 myosin family protein contains Pfam pro... 30 1.1
At1g50450.1 68414.m05655 expressed protein 28 4.4
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 27 5.8
At5g28480.1 68418.m03462 hypothetical protein 27 7.7
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 27 7.7
At1g80820.1 68414.m09482 cinnamoyl-CoA reductase, putative ident... 27 7.7
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 27 7.7
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 107 bits (256), Expect = 6e-24
Identities = 62/153 (40%), Positives = 86/153 (56%), Gaps = 3/153 (1%)
Frame = +1
Query: 4 KKHNQETDSDDVPDTPNAADT-SLLMKIIRQGLVESKLDIEIQR-KDPNSPLYSVKTFEA 177
KK D DD + + ++ S+ + ++E D I+ ++P S FE
Sbjct: 36 KKWGDVEDDDDEEEAVSELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFED 95
Query: 178 LHLKPNLLKGVYA-MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR 354
L+L P L+KG+Y M F PSKIQ +LP ++ P +++IAQ+ +G+GKT FVL MLSR
Sbjct: 96 LNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSR 155
Query: 355 VDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF 453
VD PQ LC+ PT ELA Q EV KM KF
Sbjct: 156 VDPTLREPQALCICPTRELANQNMEVLQKMGKF 188
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 87.0 bits (206), Expect = 7e-18
Identities = 41/95 (43%), Positives = 63/95 (66%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT AF + +L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 349 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF 453
++D N N Q + L PT ELA+QT +V +++K+
Sbjct: 184 EKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 87.0 bits (206), Expect = 7e-18
Identities = 41/95 (43%), Positives = 63/95 (66%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT AF + +L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 349 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF 453
++D N N Q + L PT ELA+QT +V +++K+
Sbjct: 184 EKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 82.2 bits (194), Expect = 2e-16
Identities = 39/95 (41%), Positives = 61/95 (64%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
FE LK +LL+G+Y GF PS IQE ++P L +++A++++GTGKT AF + L
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPTL 213
Query: 349 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF 453
++D N Q + L PT ELA+QT +V +++K+
Sbjct: 214 EKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 81.8 bits (193), Expect = 3e-16
Identities = 39/94 (41%), Positives = 61/94 (64%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTAAF + +L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVL 190
Query: 349 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 450
++D + N Q + + PT ELA+QT +V ++ K
Sbjct: 191 EKIDQDNNVIQAVIIVPTRELALQTSQVCKELGK 224
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 81.8 bits (193), Expect = 3e-16
Identities = 39/94 (41%), Positives = 61/94 (64%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTAAF + +L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVL 190
Query: 349 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 450
++D + N Q + + PT ELA+QT +V ++ K
Sbjct: 191 EKIDQDNNVIQAVIIVPTRELALQTSQVCKELGK 224
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 72.9 bits (171), Expect = 1e-13
Identities = 38/88 (43%), Positives = 57/88 (64%)
Frame = +1
Query: 160 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 339
+ +F + +K ++L+GVY GF PS IQ+ A+ +L +++IAQ+QSGTGKT+ L
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQG--RDVIAQAQSGTGKTSMIAL 91
Query: 340 AMLSRVDSNKNYPQVLCLSPTYELAIQT 423
++ VD++ Q L LSPT ELA QT
Sbjct: 92 SVCQVVDTSSREVQALILSPTRELATQT 119
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 71.7 bits (168), Expect = 3e-13
Identities = 41/117 (35%), Positives = 66/117 (56%)
Frame = +1
Query: 166 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 345
+F+A+ L+P+LL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F +
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKG--LDVIQQAQSGTGKTATFCSGV 99
Query: 346 LSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 516
L ++D + Q L L+PT ELA Q +V + + +K + V G + ++
Sbjct: 100 LQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRV 155
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 71.3 bits (167), Expect = 4e-13
Identities = 40/108 (37%), Positives = 65/108 (60%)
Frame = +1
Query: 100 VESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADP 279
+E LD E + + +K+F+ + + +L+GVY G+ PS+IQ+ AL +L
Sbjct: 1 MEGTLDEENLVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKG- 59
Query: 280 PQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQT 423
+++IAQ+QSGTGKT+ +++ V+ + QVL LSP+ ELA QT
Sbjct: 60 -RDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQT 106
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 70.9 bits (166), Expect = 5e-13
Identities = 42/118 (35%), Positives = 66/118 (55%)
Frame = +1
Query: 163 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 342
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSG 96
Query: 343 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 516
+L ++D + Q L L+PT ELA Q +V + + +K+ V G + +I
Sbjct: 97 VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRI 153
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 69.7 bits (163), Expect = 1e-12
Identities = 42/118 (35%), Positives = 65/118 (55%)
Frame = +1
Query: 163 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 342
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSG 96
Query: 343 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 516
+L ++D Q L L+PT ELA Q +V + + +K+ V G + +I
Sbjct: 97 VLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVREDQRI 153
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 68.5 bits (160), Expect = 3e-12
Identities = 38/128 (29%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Frame = +1
Query: 121 EIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQ 300
E+ RK+ FE+L+L PN+ + G+ P+ IQ +P +L+ +++A
Sbjct: 14 ELHRKEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG--VDVVAM 71
Query: 301 SQSGTGKTAAFVLAMLSRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLK 474
+++G+GKTAAF++ ML ++ + + + L LSPT +LA QT + ++ KF ++++
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKF-TDLRVS 130
Query: 475 YAVRGEEL 498
V G+ +
Sbjct: 131 LLVGGDSM 138
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 64.9 bits (151), Expect = 3e-11
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Frame = +1
Query: 115 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 294
D E ++K + + + KTFE+L L N K + MGF ++IQ A+P L+ ++++
Sbjct: 138 DKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMG--EDVL 195
Query: 295 AQSQSGTGKTAAFVL---AMLSRVD-SNKNYPQVLCLSPTYELAIQTGEVAAKMAKF 453
+++G+GKT AF++ +L RV + +N VL + PT ELAIQ+ VA ++ K+
Sbjct: 196 GAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKY 252
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 64.1 bits (149), Expect = 5e-11
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Frame = +1
Query: 28 SDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKG 207
S+D D + D L+ K V++ K +S L + F+ L P LK
Sbjct: 338 SEDSSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKTR-FDQFPLSPLSLKA 396
Query: 208 VYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV--------DS 363
+ GF + +QE LP +L ++++A++++GTGKT AF+L + V DS
Sbjct: 397 IKDAGFETMTVVQEATLPIILQG--KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 364 NKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP 501
+ VL + PT ELA Q A + K+ P I ++ + G +LP
Sbjct: 455 RQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLP 500
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 63.3 bits (147), Expect = 1e-10
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Frame = +1
Query: 145 SPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 321
S Y KT F+ L P LKG+ GF + +QE LP +L ++++A++++GTGK
Sbjct: 73 SDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQG--KDILAKAKTGTGK 130
Query: 322 TAAFVLAMLSRV-------DSNKNYPQ-VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKY 477
T AF+L + V N++ P VL + PT ELA Q A + K+ P I ++
Sbjct: 131 TVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQV 190
Query: 478 AVRGEELP 501
+ G +LP
Sbjct: 191 VIGGTKLP 198
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 63.3 bits (147), Expect = 1e-10
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Frame = +1
Query: 97 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLAD 276
L+ KLDI +Q + P V TF + L P LL + G++ P+ IQ A+P L
Sbjct: 89 LLRRKLDIHVQGQGSAVPP-PVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTG 147
Query: 277 PPQNMIAQSQSGTGKTAAFVLAMLSRV---------DSNKNYPQVLCLSPTYELAIQTGE 429
++++A + +G+GKTA+F++ ++SR D +N P + L+PT EL +Q +
Sbjct: 148 --KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN-PLAMVLAPTRELCVQVED 204
Query: 430 VAAKMAKFCPEIKLKYAVRGEEL 498
A + K P K V G+ +
Sbjct: 205 QAKMLGKGLP-FKTALVVGGDPM 226
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
Query: 349 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL 471
+++ + L L T ELA Q + + + P+ K+
Sbjct: 106 QQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKV 146
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = +1
Query: 169 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 348
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
Query: 349 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL 471
+++ + L L T ELA Q + + + P+ K+
Sbjct: 106 QQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKV 146
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 57.6 bits (133), Expect = 5e-09
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Frame = +1
Query: 115 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 294
D I K P ++++E L LLK V G+ PS IQ A+P L +++I
Sbjct: 298 DFNISYKGSRIPR-PMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIP--LGLQQRDVI 354
Query: 295 AQSQSGTGKTAAFVLAMLSRVD-----SNKNY---PQVLCLSPTYELAIQTGEVAAKMAK 450
+++G+GKTAAFVL ML+ + S +N P + ++PT ELA Q E K A
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 451 FCPEIKLKYAVRGEEL-PRGSKIT 519
+ ++ V G+ + +G KIT
Sbjct: 415 YL-GFRVTSIVGGQSIEEQGLKIT 437
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 57.2 bits (132), Expect = 6e-09
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Frame = +1
Query: 166 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL-- 339
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLIPG 216
Query: 340 -AMLSRV-DSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 450
L R+ + ++ P +L LSPT ELA Q E A K +
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR 255
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 57.2 bits (132), Expect = 6e-09
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Frame = +1
Query: 166 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL-- 339
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLIPG 216
Query: 340 -AMLSRV-DSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 450
L R+ + ++ P +L LSPT ELA Q E A K +
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR 255
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 57.2 bits (132), Expect = 6e-09
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Frame = +1
Query: 166 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL-- 339
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLIPG 216
Query: 340 -AMLSRV-DSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 450
L R+ + ++ P +L LSPT ELA Q E A K +
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR 255
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 56.8 bits (131), Expect = 8e-09
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Frame = +1
Query: 97 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLAD 276
+ ++ DI ++ +D P+ K F+ + N+L+ + +GF P+ IQ P L
Sbjct: 146 MYRTERDISVEGRDVPKPM---KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG 202
Query: 277 PPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY-----PQVLCLSPTYELAIQTGEVAAK 441
+++I +++G+GKT A++L L V + P VL L+PT ELA+Q E + K
Sbjct: 203 --RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 56.8 bits (131), Expect = 8e-09
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Frame = +1
Query: 97 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLAD 276
+ ++ DI ++ +D P+ K F+ + N+L+ + +GF P+ IQ P L
Sbjct: 146 MYRTERDISVEGRDVPKPM---KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG 202
Query: 277 PPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY-----PQVLCLSPTYELAIQTGEVAAK 441
+++I +++G+GKT A++L L V + P VL L+PT ELA+Q E + K
Sbjct: 203 --RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 56.8 bits (131), Expect = 8e-09
Identities = 27/71 (38%), Positives = 45/71 (63%)
Frame = +1
Query: 145 SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 324
SPL+S K+FE L L +LL + GF+ P+ +Q A+P ++ + + QS +G+GKT
Sbjct: 104 SPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG--HDAVIQSYTGSGKT 161
Query: 325 AAFVLAMLSRV 357
A++L +LS +
Sbjct: 162 LAYLLPILSEI 172
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 56.0 bits (129), Expect = 1e-08
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Frame = +1
Query: 154 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 333
+ TF L+L LL+ +G+ P+ IQ +P L +++ A + +G+GKTAAF
Sbjct: 164 FHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTG--RDLCASAITGSGKTAAF 221
Query: 334 VLAMLSRV---DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG 489
L L R+ +VL L+PT ELA+Q + +A+F +IK V G
Sbjct: 222 ALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQF-TDIKCGLIVGG 275
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 55.6 bits (128), Expect = 2e-08
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Frame = +1
Query: 118 IEIQRKDPNSPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 294
IE + + Y KT F+ L P LK + G+ + +QE LP +L ++++
Sbjct: 38 IEADKTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKG--KDVL 95
Query: 295 AQSQSGTGKTAAFVLAMLSRV-------DSNKNYP-QVLCLSPTYELAIQTGEVAAKMAK 450
A++++GTGKT AF+L + V NK P L + PT ELA Q A + K
Sbjct: 96 AKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLK 155
Query: 451 FCPEIKLKYAVRGEEL 498
+ P I ++ + G L
Sbjct: 156 YHPSIGVQVVIGGTRL 171
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 55.2 bits (127), Expect = 3e-08
Identities = 36/121 (29%), Positives = 61/121 (50%)
Frame = +1
Query: 136 DPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGT 315
+P+S S FE L L ++ +G P+ +Q +P +LA ++++ +Q+G+
Sbjct: 49 NPSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAG--RDVLGLAQTGS 106
Query: 316 GKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE 495
GKTAAF L +L R+ + L ++PT ELA Q E K C ++ V G +
Sbjct: 107 GKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAE-QFKALGSCLNLRCSVIVGGMD 165
Query: 496 L 498
+
Sbjct: 166 M 166
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 54.8 bits (126), Expect = 3e-08
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Frame = +1
Query: 166 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA-----A 330
TFE+ L P +L+ + + GF +P+ IQ P L ++++A +++G+GKT A
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQS--RDIVAIAKTGSGKTLGYLIPA 493
Query: 331 FVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 450
F+L R DS +N P VL L+PT ELA Q + A + +
Sbjct: 494 FILLRHCRNDS-RNGPTVLILAPTRELATQIQDEALRFGR 532
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 54.0 bits (124), Expect = 6e-08
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Frame = +1
Query: 46 TPNAADTSLLMKIIR-QGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMG 222
T A +S +II Q + E+ +IE + +++ + ++L + +G
Sbjct: 36 TRRALKSSPSSRIINLQAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIG 95
Query: 223 FNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPT 402
F P+ IQ ALPTL ++ I +Q+G+GKT ++L + S ++ ++ Q + + PT
Sbjct: 96 FVFPTDIQREALPTLFTG--RDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPT 153
Query: 403 YELAIQTGEVAAKMA 447
EL +Q +VA +A
Sbjct: 154 RELGMQVTKVARMLA 168
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 53.6 bits (123), Expect = 8e-08
Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Frame = +1
Query: 121 EIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQ 300
E ++K+ +P K+FE L L L++ + G P+ IQ++A+P +L ++++A+
Sbjct: 36 EEEQKEEEAP----KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG--KDVVAR 89
Query: 301 SQSGTGKTAAFVLAMLSR------VDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE 462
+++G+GKT A++L +L + V K P L P+ EL Q + + + C
Sbjct: 90 AKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELC-R 148
Query: 463 IKLK 474
++LK
Sbjct: 149 VQLK 152
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 51.6 bits (118), Expect = 3e-07
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Frame = +1
Query: 103 ESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP 282
E+ DI I+ N P V TF + L L + + P+ +Q A+P L A
Sbjct: 127 EAYEDIPIETSGDNVPP-PVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAG-- 183
Query: 283 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEV 432
++++A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q +
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 433 AAKMA 447
A K +
Sbjct: 244 ARKFS 248
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 50.8 bits (116), Expect = 5e-07
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Frame = +1
Query: 160 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 339
VKTF L ++ L+K +G+ PSKIQ ALP L +++I +Q+G+GKT AF +
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEG--KDVIGLAQTGSGKTGAFAI 65
Query: 340 AMLSRV-----DSNKNYPQ-------VLCLSPTYELAIQTGE 429
+L + DS + LSPT ELAIQ E
Sbjct: 66 PILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 50.8 bits (116), Expect = 5e-07
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Frame = +1
Query: 127 QRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 306
++++P+ +YS K F+ + P LK + A G +++Q+ L L ++ + +++
Sbjct: 316 EKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDG--KDALVKAK 373
Query: 307 SGTGKTAAFVL----AMLSRVDSNKNYPQV-----LCLSPTYELAIQTGEVAAKMAKFCP 459
+GTGK+ AF+L +L ++S K +V L L PT ELA Q + KF
Sbjct: 374 TGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHD 433
Query: 460 EIKLKYAVRG 489
I ++ + G
Sbjct: 434 GIGVQTLIGG 443
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 50.8 bits (116), Expect = 5e-07
Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Frame = +1
Query: 115 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 294
+I ++ KD P VK+F + +L+ V GF P+ IQ P +A +++I
Sbjct: 86 EITVEGKDIPKP---VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWP--MAMKGRDLI 140
Query: 295 AQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAKFCP 459
+++G+GKT +++L + V++ + P VL L+PT ELA+Q + + +KF
Sbjct: 141 GIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQ---IQQEASKFGS 197
Query: 460 EIKLKYAVRGEELPRGSKI 516
K+K +P+G ++
Sbjct: 198 SSKIKTTCIYGGVPKGPQV 216
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 50.4 bits (115), Expect = 7e-07
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Frame = +1
Query: 7 KHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALH- 183
K ++ +++ + P L ++ R L + I + + PL S + +
Sbjct: 91 KAEEQITKNEIVENPKK---ELNRQMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYG 147
Query: 184 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVD- 360
+ +L+ + +GF P+ IQ A+P LL+ + A + +G+GKT AF+ ML ++
Sbjct: 148 CEGYILRNLAELGFKEPTPIQRQAIPILLSG--RECFACAPTGSGKTFAFICPMLIKLKR 205
Query: 361 SNKNYPQVLCLSPTYELAIQTGEVAAKMAK 450
+ + + + LSP ELA QT K+ K
Sbjct: 206 PSTDGIRAVILSPARELAAQTAREGKKLIK 235
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 49.6 bits (113), Expect = 1e-06
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Frame = +1
Query: 115 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 294
DI ++ + P V TF + L L + + P+ +Q A+P LLA+ ++++
Sbjct: 136 DIPVETSGGDVPP-PVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLM 192
Query: 295 AQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEVAAKM 444
A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q + A K
Sbjct: 193 ACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
Query: 445 A 447
+
Sbjct: 253 S 253
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 49.6 bits (113), Expect = 1e-06
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Frame = +1
Query: 115 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 294
DI ++ + P V TF + L L + + P+ +Q A+P LLA+ ++++
Sbjct: 136 DIPVETSGGDVPP-PVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLM 192
Query: 295 AQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEVAAKM 444
A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q + A K
Sbjct: 193 ACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
Query: 445 A 447
+
Sbjct: 253 S 253
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 49.6 bits (113), Expect = 1e-06
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Frame = +1
Query: 109 KLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQN 288
+L I + D + P VKTFE ++ + + P+ IQ ALP +L+ ++
Sbjct: 213 RLGIRVSGFDVHRP---VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSG--RD 267
Query: 289 MIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQ------VLCLSPTYELAIQTGEVAAKMAK 450
+I +++G+GKTAAFVL M+ + + V+C +PT ELA Q A K +K
Sbjct: 268 VIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVIC-APTRELAHQIFLEAKKFSK 326
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 49.6 bits (113), Expect = 1e-06
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Frame = +1
Query: 115 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 294
DI I+ N P V TF + L L + + P+ +Q A+P LL ++++
Sbjct: 144 DIPIETSGDNVPP-PVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEG--RDLM 200
Query: 295 AQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEVAAKM 444
A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q + A K
Sbjct: 201 ACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKF 260
Query: 445 A 447
+
Sbjct: 261 S 261
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 49.2 bits (112), Expect = 2e-06
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = +1
Query: 208 VYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL---AMLSRVDSNKNY- 375
VY+ GF+APS IQ + P +A ++++A +++G+GKT +++ L R+ ++
Sbjct: 244 VYSAGFSAPSPIQAQSWP--IAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 376 PQVLCLSPTYELAIQTGEVAAKMAK 450
P +L LSPT ELA Q A K K
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGK 326
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 48.0 bits (109), Expect = 4e-06
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = +1
Query: 166 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 345
TF++L L + MGF ++IQ ++ LL ++++ +++G+GKT AF++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEG--KDVLGAARTGSGKTLAFLIPA 147
Query: 346 LSRVDSNKNYPQ----VLCLSPTYELAIQTGEVAAKMAK 450
+ + + P+ V+ + PT ELAIQT VA ++ K
Sbjct: 148 VELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLK 186
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 47.6 bits (108), Expect = 5e-06
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Frame = +1
Query: 127 QRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 306
++++P+ +YS K F+ + P LK + A G +++Q+ L L ++ + +++
Sbjct: 363 EKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDG--KDALVKAK 420
Query: 307 SGTGKTAAFVL----AMLSRVDSNKNYPQ-----VLCLSPTYELAIQ 420
+GTGK+ AF+L +L ++S K + VL L PT ELA Q
Sbjct: 421 TGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQ 467
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 46.4 bits (105), Expect = 1e-05
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Frame = +1
Query: 76 MKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQET 252
MK +Q E+K + + K S L++ +F +L L L + MGF AP+ +Q
Sbjct: 1 MKRAQQSARETKQEAKDASK-AKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQ 59
Query: 253 ALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQV--------LCLSPTYE 408
A+P +L+ ++++ + +GTGKT A++ ++ + + P+V L + PT E
Sbjct: 60 AIPVILSG--RDVLVNAPTGTGKTIAYLAPLIHHLQGHS--PKVDRSHGTFALVIVPTRE 115
Query: 409 LAIQTGEVAAKMAKFCPEIKLKYAVRGEE 495
L +Q E K+ I Y + GE+
Sbjct: 116 LCLQVYETLEKLLHRFHWIVPGYVMGGEK 144
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 46.4 bits (105), Expect = 1e-05
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Frame = +1
Query: 4 KKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALH 183
K+ +E++ + D P + L + + +G E + + + + ++KTF +
Sbjct: 66 KREEKESEKNKKKDVP---EKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESN 122
Query: 184 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV-- 357
L N+L F PS IQ P LL +++I +++G+GKT AF + + V
Sbjct: 123 LPENVLD--CCKTFEKPSPIQSHTWPFLLDG--RDLIGIAKTGSGKTLAFGIPAIMHVLK 178
Query: 358 -------DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC 456
S K P L LSPT ELA+Q +V + + C
Sbjct: 179 KNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +1
Query: 160 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 339
V+ F L + +G+ + + +Q A+P L ++++ +++G+GKT AFV+
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCG--RDILGAARTGSGKTLAFVI 127
Query: 340 AMLSRVDSNKNYPQ----VLCLSPTYELAIQTGEVAAKMAKF 453
+L ++ + P+ + +SPT ELA QT V K+ KF
Sbjct: 128 PILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKF 169
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Frame = +1
Query: 184 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 363
L ++++ + GF + +Q +P L + ++++ + +G+GKT AF+L + +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSH--KDVVVDAATGSGKTLAFLLPFIEIIRR 80
Query: 364 NKNYP----QVL--CLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 498
+ +YP QV+ +SPT EL+ Q +VA P + V G E+
Sbjct: 81 SNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREV 131
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.0 bits (99), Expect = 6e-05
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Frame = +1
Query: 154 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 333
+S KTF + +++K + F+ P+ IQ A ++ ++ I QSG+GKT A+
Sbjct: 371 FSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDG--KSCIIADQSGSGKTLAY 428
Query: 334 VLAMLSRV---------DSNKNYPQVLCLSPTYELAIQ 420
++ ++ R+ S+ P+V+ L PT ELA Q
Sbjct: 429 LVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQ 466
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +1
Query: 286 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 465
++I Q++SG GKTA FVL+ L +++ + L L T ELA Q + + + P+
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 466 KL 471
K+
Sbjct: 62 KV 63
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 42.7 bits (96), Expect = 1e-04
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = +1
Query: 109 KLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQN 288
+L++++ KD P +K + L +L + + + P IQ ALP +++ ++
Sbjct: 514 ELELKVHGKDVPRP---IKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSG--RD 568
Query: 289 MIAQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAK 450
I +++G+GKT FVL ML + + P L ++PT EL Q K +K
Sbjct: 569 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSK 627
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 40.7 bits (91), Expect = 6e-04
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = +1
Query: 109 KLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQN 288
+L++++ KD P ++ + L +L + + + P IQ ALP +++ ++
Sbjct: 381 ELELKVHGKDVPRP---IQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSG--RD 435
Query: 289 MIAQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMAK 450
I +++G+GKT FVL ML + + P L ++PT EL Q K +K
Sbjct: 436 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSK 494
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 40.7 bits (91), Expect = 6e-04
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Frame = +1
Query: 184 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 363
L ++++ + GF + +Q +P L + ++++ + +G+GKT AF+L + +
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSH--KDVVVDAATGSGKTLAFLLPFIEIIRR 81
Query: 364 NKNYP----QVL--CLSPTYELAIQTGEVA 435
+ +YP QV+ +SPT EL+ Q +VA
Sbjct: 82 SNSYPPKPHQVMGVIISPTRELSAQIHKVA 111
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 40.3 bits (90), Expect = 8e-04
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Frame = +1
Query: 178 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 357
L + P ++K + G IQ+ L + ++MI ++++GTGKT AF + ++ ++
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEG--RDMIGRARTGTGKTLAFGIPIIDKI 178
Query: 358 -------DSNKNYPQVLCLSPTYELAIQ 420
KN PQ L L+PT ELA Q
Sbjct: 179 IKFNAKHGRGKN-PQCLVLAPTRELARQ 205
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 38.7 bits (86), Expect = 0.002
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Frame = +1
Query: 253 ALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV---------DSNKNYPQVLCLSPTY 405
A+P L ++++A + +G+GKTA+F++ ++SR D +N P + L+PT
Sbjct: 3 AIPAALTG--KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN-PLAMVLAPTR 59
Query: 406 ELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 498
EL +Q + A + K P K V G+ +
Sbjct: 60 ELCVQVEDQAKMLGKGLP-FKTALVVGGDPM 89
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 37.5 bits (83), Expect = 0.005
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +1
Query: 178 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 357
L + P ++K + + G IQ+ L + ++MI ++++GTGKT AF + ++ ++
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEG--RDMIGRARTGTGKTLAFGIPIIDKI 166
Query: 358 ------DSNKNYPQVLCLSPTYELAIQ 420
P L L+PT ELA Q
Sbjct: 167 IKYNAKHGRGRNPLCLVLAPTRELARQ 193
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 37.1 bits (82), Expect = 0.007
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Frame = +1
Query: 76 MKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETA 255
M + L+ + I + +D P +K F + LL+ + G P+ IQ
Sbjct: 71 MSTKQMDLIRKQWHITVNGEDIPPP---IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQG 127
Query: 256 LPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK--------NYPQVLCLSPTYEL 411
LP +L+ ++MI + +G+GKT FVL M+ + P L + P+ EL
Sbjct: 128 LPVVLSG--RDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSREL 185
Query: 412 AIQTGEV 432
A QT +V
Sbjct: 186 AKQTYDV 192
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 36.3 bits (80), Expect = 0.012
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +1
Query: 160 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 339
+K F+ + +L + G P+ IQ LP +LA ++MI + +G+GKT FVL
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAG--RDMIGIAFTGSGKTLVFVL 202
Query: 340 AMLSRVDSNK--------NYPQVLCLSPTYELAIQTGEV 432
M+ + P L + P+ ELA QT EV
Sbjct: 203 PMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEV 241
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 36.3 bits (80), Expect = 0.012
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Frame = +1
Query: 184 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 363
L ++++ + F + +Q +P L + +++ + +G+GKT AFV+ ++ +
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSY--KDVAVDAATGSGKTLAFVVPLVEILRR 80
Query: 364 NKNYP----QVL--CLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 516
+ ++P QV+ +SPT EL+ Q VA + V G E+ KI
Sbjct: 81 STSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKI 137
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 33.9 bits (74), Expect = 0.067
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Frame = +1
Query: 283 QNMIAQSQSGTGKTAAFVLAMLSRVDS----------NKNYPQVLCLSPTYELAIQT--- 423
+++IA++++GTGKT AF + ++ R+ + P+ L L+PT ELA Q
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 424 -GEVAAKMAKFCPEIKLKYAVRGEELPRG 507
E A ++ C + Y ++ L RG
Sbjct: 200 IKESAPYLSTVCVYGGVSYTIQQSALTRG 228
>At3g60040.1 68416.m06705 F-box family protein contains a novel
domain with similarity to F-box domain;
Length = 838
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +1
Query: 91 QGLVESKLDIEIQRK----DPNSPLYSVKTFEALHLKPNLLKGVYA 216
+ LVE+KLD+ ++RK D + ++ ++LHL P+ + +Y+
Sbjct: 494 ESLVEAKLDLGLERKVLRMDVTDLIIGIRNVQSLHLSPDSVHVIYS 539
>At5g15570.1 68418.m01823 expressed protein hypothetical protein
F14P3.19 - Arabidopsis thaliana, EMBL:AC009755
Length = 381
Score = 30.7 bits (66), Expect = 0.62
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 235 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSN 366
S QETAL TL +++ Q GKTA F + M RV+SN
Sbjct: 61 SSFQETALETLT-----DVVIQYIQNIGKTAQFYVNMAGRVESN 99
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 30.3 bits (65), Expect = 0.82
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Frame = +1
Query: 1 DKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEAL 180
DKK + D+V + ++++ K ++ G VE D+E+ +PN+ V F
Sbjct: 56 DKKRKASEEEDEVK-SDSSSEKKKSSKKVKLG-VE---DVEVD--NPNA----VSKFR-- 102
Query: 181 HLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML---- 348
+ L + + A G A IQ + +L +++ ++++G GKT AFVL +L
Sbjct: 103 -ISAPLREKLKANGIEALFPIQASTFDMVLDGA--DLVGRARTGQGKTLAFVLPILESLV 159
Query: 349 ---SRVDSNKNY---PQVLCLSPTYELAIQ 420
++ Y P VL L PT ELA Q
Sbjct: 160 NGPAKSKRKMGYGRSPSVLVLLPTRELAKQ 189
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 30.3 bits (65), Expect = 0.82
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 148 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP-QNMIAQSQSGTGKT 324
PLY + EA K N VYA I +TA+ ++ D Q++I +SG GKT
Sbjct: 212 PLYGNRYIEAYRKKSNESPHVYA--------IADTAIREMIRDEVNQSIIISGESGAGKT 263
Query: 325 AAFVLAM 345
+AM
Sbjct: 264 ETAKIAM 270
>At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 916
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +1
Query: 58 ADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPS 237
A ++ ++ I QG E + + I+R+D SVK A+H + L + AMG P
Sbjct: 513 AKANINVRAISQGCSEYNVTVVIKRED------SVKALRAVHSRFFLSRTTLAMGIVGPG 566
Query: 238 KIQETALPTL 267
I T L L
Sbjct: 567 LIGATLLDQL 576
>At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 859
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +1
Query: 58 ADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPS 237
A ++ ++ I QG E + + I+R+D SVK A+H + L + AMG P
Sbjct: 513 AKANINVRAISQGCSEYNVTVVIKRED------SVKALRAVHSRFFLSRTTLAMGIVGPG 566
Query: 238 KIQETALPTL 267
I T L L
Sbjct: 567 LIGATLLDQL 576
>At1g50360.1 68414.m05645 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1153
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 148 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP-QNMIAQSQSGTGKT 324
PLY + EA + N VYA I +TA+ ++ D Q++I +SG GKT
Sbjct: 204 PLYGNRNIEAYRKRSNESPHVYA--------IADTAIREMIRDEVNQSIIISGESGAGKT 255
Query: 325 AAFVLAM 345
+AM
Sbjct: 256 ETAKIAM 262
>At1g50450.1 68414.m05655 expressed protein
Length = 428
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 358 DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEE 495
D ++NY +VL L T + G A ++K CPE+K+ R E
Sbjct: 34 DPSRNY-RVLVLGGTGRVG---GSTATALSKLCPELKIVVGGRNRE 75
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 280 PQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQ 420
P N + Q G GKT LA + + S Q ++PT LAIQ
Sbjct: 542 PMNRLLQGDVGCGKTVVAFLACMEVIGSGY---QAAFMAPTELLAIQ 585
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 164 FTEYNGELGSFLCISISSLDSTRPCRMIFIKREVSAAL 51
F +Y GEL SF LD +F++ E+ AAL
Sbjct: 478 FDKYAGELRSFFKRQTQLLDKKFEDLKVFVREEIRAAL 515
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 164 FTEYNGELGSFLCISISSLDSTRPCRMIFIKREVSAAL 51
F +Y GEL SF LD +F++ E+ AAL
Sbjct: 491 FDKYAGELRSFFKRQTQLLDKKFEDLKVFVREEIRAAL 528
>At1g80820.1 68414.m09482 cinnamoyl-CoA reductase, putative
identical to CCR2 (GI:12407990), similar to cinnamoyl
CoA reductase from Eucalyptus gunnii [GI:2058311]
Length = 332
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 406 ELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 504
E A+ GEV +AKF PE L E+ PR
Sbjct: 247 ETALHRGEVVEILAKFFPEYPLPTKCSDEKNPR 279
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 164 FTEYNGELGSFLCISISSLDSTRPCRMIFIKREVSAAL 51
F +Y GEL SF LD +F++ E+ AAL
Sbjct: 482 FDKYAGELRSFFKRQTQLLDKKFEDLKVFVREEIRAAL 519
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.130 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,632
Number of Sequences: 28952
Number of extensions: 189730
Number of successful extensions: 477
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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