Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A01f
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          179   1e-45
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         30   0.95 
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         30   0.95 
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   2.9  
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          27   5.0  
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)               27   6.7  
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)                    27   6.7  
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                27   6.7  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 27   8.8  
SB_19169| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  179 bits (435), Expect = 1e-45
 Identities = 83/105 (79%), Positives = 95/105 (90%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++AT
Sbjct: 24  GRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLAT 83

Query: 183 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 317
           VKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N  V V  +
Sbjct: 84  VKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 48   LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 140
            L +GA ++CADN G   L  +A QG    +N
Sbjct: 913  LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 48  LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 140
           L +GA ++CADN G   L  +A QG    +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 332  ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 201
            A  FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 145 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 2
           SLF++     T  T    AP L    + APT  P   ++ AP  PP P
Sbjct: 67  SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114


>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 323 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 201
           FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 2   FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42


>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 131 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 33
           T   + + +I   CP VVG V+ CS W     T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 41  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 178
           P   S SS+  R +H+GK S         RSP  T G     HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSH-SNHDAG 151


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 355 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 215
           AT  V A    + L  T+ PAL++K+IN  +R  N  + L+    +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232


>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
          Length = 192

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 332 ALHFALVIDYDTRIVLKVYK-YSITPSE 252
           AL FAL + YDT+I++   K YSI+P E
Sbjct: 137 ALLFALYLVYDTQIMMGGGKMYSISPEE 164


>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
          Length = 1225

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 178 ATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 59
           AT  S + A+ SL      PW+  T+R   P +SA+  TA
Sbjct: 816 ATSRSGDSASRSLTNLGCYPWSKQTFRHEGPPISARPCTA 855


>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 820

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 59  SSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDC 175
           +S   RR+ RG+   CD C  YQ    Q +    RG DC
Sbjct: 440 TSKNYRRKQRGQGKQCDNC-GYQHMANQESCPA-RGKDC 476


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 44  GSPSGSSNQLRRQH--RGKESVCDRCPRYQRSPEQTAGGRFRGH 169
           G P G   Q  + H  RG +   DR PR   S   T+GG   GH
Sbjct: 306 GPPDGPHGQRMQHHDIRGPDPRGDRGPRGPPSGVPTSGGPPPGH 349


>SB_19169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 335 GHHRACSQRMC*SVAAYCLKRELYRL 412
           G+ R CS RM  S  + CLK +  RL
Sbjct: 14  GNSRGCSTRMTRSFGSLCLKNDPMRL 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,932,410
Number of Sequences: 59808
Number of extensions: 330991
Number of successful extensions: 861
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)