Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A01f
         (435 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062716-1|AAH62716.1|  140|Homo sapiens ribosomal protein L23 p...   249   3e-66
X55954-1|CAA39417.1|  140|Homo sapiens HL23 ribosomal protein pr...   249   4e-66
X52839-1|CAA37023.1|  140|Homo sapiens ribosomal protein L17 pro...   249   4e-66
BC106061-1|AAI06062.1|  140|Homo sapiens RPL23 protein protein.       249   4e-66
BC104651-1|AAI04652.1|  140|Homo sapiens ribosomal protein L23 p...   249   4e-66
BC010114-1|AAH10114.1|  140|Homo sapiens ribosomal protein L23 p...   249   4e-66
AB061827-1|BAB79465.1|  140|Homo sapiens ribosomal protein L23 p...   249   4e-66
BC003518-1|AAH03518.1|  134|Homo sapiens Similar to ribosomal pr...   244   8e-65
BC034378-1|AAH34378.1|   77|Homo sapiens RPL23 protein protein.       139   4e-33
AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1...    29   5.2  
AL834486-1|CAD39144.1|  568|Homo sapiens hypothetical protein pr...    29   5.2  
AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein pr...    29   5.2  
AK131400-1|BAD18547.1|  852|Homo sapiens protein ( Homo sapiens ...    29   5.2  
AK128850-1|BAC87646.1|  673|Homo sapiens protein ( Homo sapiens ...    29   5.2  
AJ313524-1|CAC86408.1|  852|Homo sapiens putative binding protei...    29   5.2  
AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein.     29   5.2  

>BC062716-1|AAH62716.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  249 bits (610), Expect = 3e-66
 Identities = 115/127 (90%), Positives = 124/127 (97%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++AT
Sbjct: 5   GRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMAT 64

Query: 183 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 362
           VKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKE
Sbjct: 65  VKKGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

Query: 363 CADLWPR 383
           CADLWPR
Sbjct: 125 CADLWPR 131


>X55954-1|CAA39417.1|  140|Homo sapiens HL23 ribosomal protein
           protein.
          Length = 140

 Score =  249 bits (609), Expect = 4e-66
 Identities = 115/127 (90%), Positives = 124/127 (97%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++AT
Sbjct: 5   GRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMAT 64

Query: 183 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 362
           VKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKE
Sbjct: 65  VKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

Query: 363 CADLWPR 383
           CADLWPR
Sbjct: 125 CADLWPR 131


>X52839-1|CAA37023.1|  140|Homo sapiens ribosomal protein L17
           protein.
          Length = 140

 Score =  249 bits (609), Expect = 4e-66
 Identities = 115/127 (90%), Positives = 124/127 (97%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++AT
Sbjct: 5   GRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMAT 64

Query: 183 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 362
           VKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKE
Sbjct: 65  VKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

Query: 363 CADLWPR 383
           CADLWPR
Sbjct: 125 CADLWPR 131


>BC106061-1|AAI06062.1|  140|Homo sapiens RPL23 protein protein.
          Length = 140

 Score =  249 bits (609), Expect = 4e-66
 Identities = 115/127 (90%), Positives = 124/127 (97%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++AT
Sbjct: 5   GRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMAT 64

Query: 183 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 362
           VKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKE
Sbjct: 65  VKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

Query: 363 CADLWPR 383
           CADLWPR
Sbjct: 125 CADLWPR 131


>BC104651-1|AAI04652.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  249 bits (609), Expect = 4e-66
 Identities = 115/127 (90%), Positives = 124/127 (97%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++AT
Sbjct: 5   GRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMAT 64

Query: 183 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 362
           VKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKE
Sbjct: 65  VKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

Query: 363 CADLWPR 383
           CADLWPR
Sbjct: 125 CADLWPR 131


>BC010114-1|AAH10114.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  249 bits (609), Expect = 4e-66
 Identities = 115/127 (90%), Positives = 124/127 (97%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++AT
Sbjct: 5   GRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMAT 64

Query: 183 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 362
           VKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKE
Sbjct: 65  VKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

Query: 363 CADLWPR 383
           CADLWPR
Sbjct: 125 CADLWPR 131


>AB061827-1|BAB79465.1|  140|Homo sapiens ribosomal protein L23
           protein.
          Length = 140

 Score =  249 bits (609), Expect = 4e-66
 Identities = 115/127 (90%), Positives = 124/127 (97%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++AT
Sbjct: 5   GRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMAT 64

Query: 183 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 362
           VKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKE
Sbjct: 65  VKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

Query: 363 CADLWPR 383
           CADLWPR
Sbjct: 125 CADLWPR 131


>BC003518-1|AAH03518.1|  134|Homo sapiens Similar to ribosomal
           protein L23 protein.
          Length = 134

 Score =  244 bits (598), Expect = 8e-65
 Identities = 113/125 (90%), Positives = 122/125 (97%)
 Frame = +3

Query: 9   GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 188
           GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 1   GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 60

Query: 189 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 368
           KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 61  KGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 120

Query: 369 DLWPR 383
           DLWPR
Sbjct: 121 DLWPR 125


>BC034378-1|AAH34378.1|   77|Homo sapiens RPL23 protein protein.
          Length = 77

 Score =  139 bits (336), Expect = 4e-33
 Identities = 64/71 (90%), Positives = 70/71 (98%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++AT
Sbjct: 5   GRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMAT 64

Query: 183 VKKGKPELRKK 215
           VKKGKPELRKK
Sbjct: 65  VKKGKPELRKK 75


>AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1
            protein.
          Length = 1906

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 382  RGHRSAHSLATGPVMAEPFISPLLLTMTP 296
            +G   AH L+ GP+   P++ P LL +TP
Sbjct: 1450 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1477


>AL834486-1|CAD39144.1|  568|Homo sapiens hypothetical protein
           protein.
          Length = 568

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 382 RGHRSAHSLATGPVMAEPFISPLLLTMTP 296
           +G   AH L+ GP+   P++ P LL +TP
Sbjct: 112 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 139


>AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein
           protein.
          Length = 1285

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 382 RGHRSAHSLATGPVMAEPFISPLLLTMTP 296
           +G   AH L+ GP+   P++ P LL +TP
Sbjct: 829 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 856


>AK131400-1|BAD18547.1|  852|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16493 fis, clone CTONG3004550, weakly  similar
           to Homo sapiens SH3-domain binding protein 4 (SH3BP4).
           ).
          Length = 852

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 218 YLFPEFRFTLFDCGHNHVPG 159
           Y+ P F   L  CGHN++PG
Sbjct: 379 YIHPNFTVVLTVCGHNYMPG 398


>AK128850-1|BAC87646.1|  673|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46632 fis, clone TRACH2024730, weakly  similar
           to Homo sapiens SH3-domain binding protein 4 (SH3BP4).
           ).
          Length = 673

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 218 YLFPEFRFTLFDCGHNHVPG 159
           Y+ P F   L  CGHN++PG
Sbjct: 200 YIHPSFTVVLTVCGHNYMPG 219


>AJ313524-1|CAC86408.1|  852|Homo sapiens putative binding protein
           7a5 protein.
          Length = 852

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 218 YLFPEFRFTLFDCGHNHVPG 159
           Y+ P F   L  CGHN++PG
Sbjct: 379 YIHPSFTVVLTVCGHNYMPG 398


>AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein.
          Length = 1644

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 382  RGHRSAHSLATGPVMAEPFISPLLLTMTP 296
            +G   AH L+ GP+   P++ P LL +TP
Sbjct: 1454 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1481


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,639,548
Number of Sequences: 237096
Number of extensions: 1593226
Number of successful extensions: 3830
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3825
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)