Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A01f
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   236   6e-63
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    28   2.5  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    27   5.9  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     27   5.9  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     27   5.9  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    27   7.8  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  236 bits (577), Expect = 6e-63
 Identities = 109/127 (85%), Positives = 119/127 (93%)
 Frame = +3

Query: 3   GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 182
           GRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +
Sbjct: 5   GRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCS 64

Query: 183 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 362
           VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKE
Sbjct: 65  VKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

Query: 363 CADLWPR 383
           CADLWPR
Sbjct: 125 CADLWPR 131


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +3

Query: 42  LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 209
           L L  G V  C +D    KN  + +  G   + G+LNR        M+ +T  K   +L 
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512

Query: 210 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 293
             V  P     +RK   +RD  F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 308 DYDTRIVLKVYKYSITPSERFPL 240
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 151 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 59
           A  LFR  ++P+   TY F   +L   L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592


>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical
           protein C44C10.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 41  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 136
           PG P G+ N       G    CD CP  + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 422 NVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 309
           ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 86  SIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 32  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 136
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 32  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 136
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 32  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 136
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 32  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 136
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 32  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 136
           P  PG+P            G E  CD CP  + +P
Sbjct: 315 PGQPGAPGQQGEPGEDGESGSEGACDHCPPPRTAP 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,733,808
Number of Sequences: 27780
Number of extensions: 233159
Number of successful extensions: 667
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)