Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308H11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 99 2e-22
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 97 2e-21
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 93 3e-20
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 92 4e-20
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 76 3e-15
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 28 0.97
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 1.7
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.2
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 3.0
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 5.2
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 5.2
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 6.8
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 6.8
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 6.8
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 25 6.8
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 9.0
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 9.0
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 99 bits (238), Expect = 2e-22
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Frame = +1
Query: 1 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 180
+ +D+D A ++G+ V N+P AN+ S EL ++ LAR V S L G W++
Sbjct: 131 NQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQVGDRSLELHRGEWNKVSSGC 190
Query: 181 SELAGKTLAILGLGRVGREVATRMYAFGMNIIGFD--PFVSADQCAQFHCTKMELEDIWP 354
E+ GKTL I+G G +G +++ A G++++ +D P + Q L ++
Sbjct: 191 WEIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDILPIMPLGSAKQL----SSLPELLH 246
Query: 355 LADYITLHTPLIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGK 519
AD+++LH P T+N I++ K+G +IN RG ++ + A KSGK
Sbjct: 247 RADFVSLHVPASPETKNMISSKEFAAMKEGSYLINASRGTVVDIPALVDASKSGK 301
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 96.7 bits (230), Expect = 2e-21
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
Frame = +1
Query: 1 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 180
+N+D+ +A G+ V+ P + + E T L+L L R + A ++ ++ G
Sbjct: 80 NNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVREDDFNLNGLLG 139
Query: 181 SELAGKTLAILGLGRVGREVATRM-YAFGMNIIGFDPFVSADQCAQFHCTKMELEDIWPL 357
+L GKT+ +LG GR+G VA + FG ++ D + +F +E +++
Sbjct: 140 HDLHGKTIGLLGTGRIGGLVAKCLKLGFGCEVLAHD-IKPNKELEKFGIQFVEQQEVLAK 198
Query: 358 ADYITLHTPLIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGK 519
AD++ LH PL T + ++ +L KKGVKIIN RGGL+ ++A++SG+
Sbjct: 199 ADFLCLHCPLTPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKALVKAIESGQ 252
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 92.7 bits (220), Expect = 3e-20
Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 1/174 (0%)
Frame = +1
Query: 1 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 180
+N+DVD A + GV V N P + L + R A +L+ G+W + L
Sbjct: 95 NNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRLGKWRQNLSLT 154
Query: 181 SELAGKTLAILGLGRVGREVATRMYAFGMNIIGFD-PFVSADQCAQFHCTKMELEDIWPL 357
+ GK + I+G+G +G+ A ++ G I+ + + A++ + + + +++
Sbjct: 155 DDPYGKRVGIIGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASFVSFDELLSS 214
Query: 358 ADYITLHTPLIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGK 519
+D I+++ PL +T + I+ ++ K GV IIN RG +I E F++A+KSGK
Sbjct: 215 SDVISINCPLTPATHDLISTKEFEKMKDGVYIINTARGAIINEDAFIKAIKSGK 268
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 92.3 bits (219), Expect = 4e-20
Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Frame = +1
Query: 1 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 180
+N+++ +A + + V++ P + + E T L+L L R + A ++ ++ G
Sbjct: 80 NNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLSLNRKIHRAYVRVREDDFNIVGLLG 139
Query: 181 SELAGKTLAILGLGRVGREVATRM-YAFGMNIIGFDPFVSADQCAQFHCTK-MELEDIWP 354
++ GKT+ ++G G++G VA FG +++ +D ++ D+ + + + +E ++
Sbjct: 140 CDIHGKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYD--INPDKKLENYGVQFVEQNEVLK 197
Query: 355 LADYITLHTPLIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGK 519
AD++ LH PL ST + +N+D L KKGV I+N RGGLI + A+ SG+
Sbjct: 198 KADFLCLHCPLTPSTTHIVNSDSLALMKKGVTIVNTSRGGLIDTKALVDAIDSGQ 252
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 76.2 bits (179), Expect = 3e-15
Identities = 47/172 (27%), Positives = 83/172 (48%)
Frame = +1
Query: 1 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 180
+ +DV + +G+ V + P A + ++ LML R L W+
Sbjct: 92 ETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRGFNQGIFELHKNNWNANCKPS 151
Query: 181 SELAGKTLAILGLGRVGREVATRMYAFGMNIIGFDPFVSADQCAQFHCTKMELEDIWPLA 360
+ GKTL ILGLG +G+ +A R AF M I+ + ++ A+ + +D+ +
Sbjct: 152 HDPEGKTLGILGLGGIGKTMAKRARAFDMKIVYHNRTPLPEEEAE-GAEFVSFDDLLAKS 210
Query: 361 DYITLHTPLIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSG 516
D ++L+ PL TR+ I ++ K+G+ I+N RG ++ E ++AL G
Sbjct: 211 DVLSLNLPLNAHTRHIIGKPEFQKMKRGIVIVNTARGAVMDEAALVEALDEG 262
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 309 ALISRHERVESDDVHAEGVHPSGHLAADPAKAK 211
A+ HE VE V+ + VH G L DP K +
Sbjct: 112 AVFDNHEEVEVFPVYRDPVHDFGFLRFDPKKIR 144
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 187 LAGKTLAILGLGRVGREVATRMYAFGMNII--GFDPFVSADQCAQ--FHCTKME 336
+AGK + G G VG+ +T + + G +I DP ++A Q A F T ME
Sbjct: 212 IAGKVAVVAGFGDVGKGCSTSLRSQGARVIVTEVDP-INALQAAMDGFEVTTME 264
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 176 VYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGA 51
+ R R HL + A E T WR + + + LS L P A
Sbjct: 334 IRRLRGHLREYVAWERNTIWREMMAMERRTQAARLSGLKPVA 375
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 3.0
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -3
Query: 228 DPAKAKDGEGLASELAASVQSPVPP-ASLQRSGSWDHVASQNQHQRAGQLARAQRI---G 61
DP+K+KDG L S V P PP + + +H + + R +L R Q G
Sbjct: 293 DPSKSKDGLNLGS--LTDVVPPQPPQPEHELAALQEHNEAHDAAMRQYELERQQNAMLPG 350
Query: 60 ARSVDHSDAL 31
S+D AL
Sbjct: 351 LASIDGLQAL 360
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 230 PTLPRPRMARVLPASSLPVYRARSHLPAFSAVE 132
P PR PA+ +PV +R H P S ++
Sbjct: 91 PQKSPPRQKHTAPATPIPVSASRHHKPHHSGLK 123
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -1
Query: 383 GVCRVM*SARGQMSSSSILVQWNWAH*SADTKGSNPMMFMPKAYILVATSRPTLPRPRMA 204
G C ++ S +S++S +W++ ++T + + +V R LP RM
Sbjct: 117 GQCAILDSQNFTLSNASTKSKWSFTKHGSNTPSDSSSPLCNSSKRVVGMLRRFLPSSRMV 176
Query: 203 RVLPA 189
R+ A
Sbjct: 177 RLSKA 181
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 119 WRARTNINVQVSSHALSALAPGALITPTPFL 27
W+ TN +QV ++ L L P + PFL
Sbjct: 96 WKTSTNPTLQVRAYMLDLLLPFFTLDLLPFL 126
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 195 ASELAASVQSPVPPA-SLQRSGSWDHVASQNQHQRAGQLA 79
A + + +S +PP+ SL R+G V++QN RA LA
Sbjct: 191 AKKASVKSKSVLPPSKSLARTGLPAEVSTQNNANRAALLA 230
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = -2
Query: 205 RGSCQRARCQCTEPGPTC-----QPSAQWKLGPRGEP 110
+G R T P PTC + + W+ P G+P
Sbjct: 618 KGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQP 654
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 445 VKIINVGRGGLIQETDFLQALK 510
+K +N+G GL+++T +Q +K
Sbjct: 148 LKALNIGNCGLVEDTGMVQIIK 169
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -1
Query: 509 FRACKKSVS*ISPPL--PTLMIFTPFLHCFKTSALIKFRVDSMSGVCRVM*SARGQMSSS 336
+R +K + + P L P + + + H T R DS + ++ + + ++SSS
Sbjct: 119 YRFLEKFIYIMGPELLEPNIGMIFLYTHSGMTHITPSIRNDSTKFLSLLINACKDRLSSS 178
Query: 335 SILVQW 318
+I +QW
Sbjct: 179 AISLQW 184
>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 367 ITLHTPLIESTRNFINADVLKQCKKGVKIINVG 465
I H L+E NFI+ + K INVG
Sbjct: 78 IASHVDLVEPVENFISTAKKQLATKPCSFINVG 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,967
Number of Sequences: 5004
Number of extensions: 42456
Number of successful extensions: 168
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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