Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308H11f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 137 4e-33
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 4e-18
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 8e-17
SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12) 59 2e-09
SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15) 31 0.58
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 28 4.1
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_23444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 5.4
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 5.4
SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_3031| Best HMM Match : NblA (HMM E-Value=8.4) 27 7.1
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_29611| Best HMM Match : DED (HMM E-Value=6.5) 27 7.1
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10) 27 9.4
SB_49257| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12) 27 9.4
SB_18754| Best HMM Match : GYR (HMM E-Value=1.5) 27 9.4
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 137 bits (332), Expect = 4e-33
Identities = 63/115 (54%), Positives = 81/115 (70%)
Frame = +1
Query: 172 YTGSELAGKTLAILGLGRVGREVATRMYAFGMNIIGFDPFVSADQCAQFHCTKMELEDIW 351
+ G+EL GKTLAI+GLGR+GREVA RM ++G+ IG+DP VS A+ + ME E IW
Sbjct: 1 FMGNELFGKTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESNIEWMETEKIW 60
Query: 352 PLADYITLHTPLIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSG 516
PLADYIT+H PLI T+ +N + CKKGV I+NV RGG+I E L+ L+SG
Sbjct: 61 PLADYITVHVPLIPPTKGMLNDKTIGMCKKGVYILNVARGGIIDEEALLRGLESG 115
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 88.2 bits (209), Expect = 4e-18
Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 6/178 (3%)
Frame = +1
Query: 1 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTAL-KAGRWDRAL-- 171
DNID+++A ++G+ V N PG + A + L++ AR+V+ A + K G ++
Sbjct: 84 DNIDLEAAKRRGILVGNTPGISDCLA-DFAWALLMAAARNVIQADAMMRKPGFKIPSIIN 142
Query: 172 YTGSELAGKTLAILGLGRVGREVATRMYAFGMNIIGFD---PFVSADQCAQFHCTKMELE 342
+ G+ ++G TL I+GLG +G VA R F M I+ ++ + + +C+ L+
Sbjct: 143 WHGTRVSGATLGIIGLGNIGLAVAKRAKGFDMRILYYNRTRKMKAESELGVHYCSG--LK 200
Query: 343 DIWPLADYITLHTPLIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSG 516
D+ +DY+ L L T++ I + L Q K +INV RGGL+ D AL++G
Sbjct: 201 DLLKESDYVMLSCALTPETKHIIKSAELSQMKPSATLINVARGGLVNHDDLTTALQNG 258
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 83.8 bits (198), Expect = 8e-17
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Frame = +1
Query: 1 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDR-ALYT 177
D+ID+ +A +G+ V N PG + L+L AR + + ++ + + +++
Sbjct: 81 DHIDLAAATIRGIRVGNTPGVVQECTADHAIGLLLASARKICSGDSVIRQPGFSKESIFN 140
Query: 178 --GSELAGKTLAILGLGRVGREVATRMYAFGMNIIGFDPFVSAD---QCAQFHCTKMELE 342
G+++ G TL I+GLG VG VA R F M I+ + D + +C+K L+
Sbjct: 141 SFGTKVTGSTLGIVGLGGVGSAVANRAKGFKMRILYHNRTRKEDKELETGAEYCSK--LD 198
Query: 343 DIWPLADYITLHTPLIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSG 516
++ +D++ L L + TR+ I A L Q K +INV RGGL+ D AL++G
Sbjct: 199 ELLKESDFVVLCCALTDETRHLITAAQLSQMKSSATLINVARGGLVNHDDLTTALQNG 256
>SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12)
Length = 189
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Frame = +1
Query: 1 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPA-STALKAGRWDRALYT 177
D ID+ +A K+G+ V N PG ++ L+L ARH+V + K G +++
Sbjct: 80 DRIDIPAATKRGIRVGNTPGVVQDCTADMAIGLLLASARHIVTGDANTRKPGFTKESIFN 139
Query: 178 --GSELAGKTLAILGLGRVGREVATRMYAFGMNII 276
G+ + G TL I+GLG VG VA R F M I+
Sbjct: 140 CFGTRVTGSTLGIVGLGAVGSAVAMRAKGFKMRIL 174
>SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 214 GLGRVGREVATRMYA-FGMNIIGFDPFVSADQCAQFHCTKMELEDIWPLADYITLHTPLI 390
GLG R YA F M I+G D + D Q +++ +W +D LH +
Sbjct: 94 GLGVARRVTPQVQYAAFEMRIMGIDYNPNQDCKDQIPGVVKKVQAVWITSDIQKLHPKFM 153
Query: 391 ESTRNFINADVLKQCKK 441
++ + +L CKK
Sbjct: 154 KNKETTSRSYILNPCKK 170
>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
Length = 930
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -3
Query: 372 GDVVR*RPNVLQLHLGAMELGALISRHERVESDDVHAEGVHPSGHLAADPAKAKDGEGLA 193
G VVR P VL +H G LG + R + GV+ + DP D +A
Sbjct: 277 GTVVRGNPRVLLVHRG--RLGTVAGRSPALSEKASDCVGVNTKSNKNVDPCSWSDVSRMA 334
Query: 192 SELAA 178
++L A
Sbjct: 335 ADLCA 339
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = -1
Query: 233 RPTLPRPR----MARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSA 66
R ++PR R R+ P RA L A +A AGT +R++ +V ++S + +
Sbjct: 546 RISVPRRRAGSAQGRITTKKKTPPRRANL-LEALTAAAAGTPAASRSSSSVSLASPGMRS 604
Query: 65 LAPGALITPTPFLPAESTS 9
+TP F P S S
Sbjct: 605 SLGSLQLTPPSFTPRSSIS 623
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 16 DSAGKKGVGVINAPGANALSACELTCTLML 105
D G+ GV V +APG C++ CT L
Sbjct: 235 DEMGRAGVTVEHAPGDADYKICQMACTYAL 264
>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 89 VSSHALSALAPGALITPTPFLPAESTSML 3
+S H L LA G PTP +PA + S+L
Sbjct: 163 LSPHELRLLAKGLKFIPTPPIPASNKSLL 191
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 296 DTKGSNPMMFMPKAYILVATSRPTLPRPRMARVLPASSLPVYRARSHLP 150
DT+ NP ++P + + S LP PR+ LP LP +R LP
Sbjct: 1318 DTRNDNPANYVPPWELPLPPSGLPLPLPRLP--LPPLRLPPPHSRLPLP 1364
>SB_23444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -3
Query: 333 HLGAMELGALISRHERVESDDVHAEGVHPSGHLAADPAKAKDGEGLASELAASVQSPVPP 154
H G +E G +++ R+ A V S +A P++ + EGL ++ A +PVP
Sbjct: 54 HPGRVEAGRRLAKWNRINRAKKEALRVVQSP-VAPGPSEPQGREGLRADDAFGTHTPVPE 112
Query: 153 ASLQRSGS 130
++ S S
Sbjct: 113 SNSAWSAS 120
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 181 CQCTEPGPTCQPSAQWKLGPRGEPEPTSTCRSARTRS 71
C TEP P Q S+ K PE +++ S T S
Sbjct: 168 CSTTEPAPQDQVSSSCKTTETSRPETSTSATSEETNS 204
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 78 VRADLHVDVGSGSPR--GPSFHCAEGWQVGPGSVH-WQRARWQDP 203
VR ++ G G+ GPS AEG ++GP +VH A W++P
Sbjct: 328 VRGPFNLSHGPGNRNRYGPSLVHAEGLRLGPKTVHRILHAVWKNP 372
>SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 226 PCQGQGWRGSCQ-RARCQCTEPGPT-CQPSAQWKL 128
PC G RG C+ RA C T PG + C+ A +KL
Sbjct: 279 PCHGAN-RGGCEGRAICVYTGPGKSICRCPASYKL 312
>SB_3031| Best HMM Match : NblA (HMM E-Value=8.4)
Length = 256
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 515 PDFRACKK-SVS*ISPPLPTLMIFTPFLHC 429
PD +C K ++S +SP LP LM+ + HC
Sbjct: 180 PDTNSCTKPAMSSLSPLLPLLMLRSVSFHC 209
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -3
Query: 246 SGHLAADPAKAKDGEGLASELAASVQSPVPPASLQRSGSWDHVASQNQHQRAGQLARAQR 67
+G D A + E S LA + SP PPA+ + V + + +L+RA++
Sbjct: 372 NGSAEPDKQAAHEPERTPSALAERITSPEPPATQPKHPG--RVEAGGRLAELNRLSRAKK 429
Query: 66 IGARSVD 46
I + V+
Sbjct: 430 IATQHVE 436
>SB_29611| Best HMM Match : DED (HMM E-Value=6.5)
Length = 486
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 515 PDFRACKK-SVS*ISPPLPTLMIFTPFLHC 429
PD +C K ++S +SP LP LM+ + HC
Sbjct: 168 PDTNSCTKPAMSSLSPLLPLLMLRSVSFHC 197
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 181 CQCTEPGPTCQPSAQWKLGPRGEPEPTSTC 92
C+ T P P+C P++Q+ L PR P + C
Sbjct: 819 CEKTSP-PSCIPASQYCLAPRECPPHQTIC 847
>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 187 LAGKTLAILGLGRVGREVATRMYAFGMNII--GFDPFVSAD-QCAQFHCTKME 336
LAGK + + G G VG+ + FG ++ DP + C F T M+
Sbjct: 214 LAGKVVVVAGYGDVGKGSVQSLKGFGSRVLITEIDPINALQAACEGFEVTTMD 266
>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
Length = 779
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 457 NVGRGGLIQETDFLQALKSGK 519
N+ RGG++ + D +ALK+G+
Sbjct: 193 NLSRGGVVNQEDLYEALKNGE 213
>SB_49257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 281 NPMMFMPKAYILVATSR--PTLPRPRMARVL 195
NP + P Y+L+A R P +PRP R L
Sbjct: 62 NPKLVQPLTYVLLAVPRPPPRMPRPVKRRQL 92
>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
Length = 567
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 169 EPGPTCQPSAQWKLGPRGEPEPTST 95
E GP P + +GP+GEP P T
Sbjct: 255 ERGPQGPPGPKGPIGPKGEPGPPLT 279
>SB_18754| Best HMM Match : GYR (HMM E-Value=1.5)
Length = 454
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -3
Query: 282 ESDDVHAEGVHPSGHLAADPAKAKDGEGLASELAASVQSPVPPASLQRSG 133
ESD SG +A D ++ +D ++ ++ +P+PP SG
Sbjct: 214 ESDKSRGSDEKESGVVARDESETRDDPSQPADGEFAIATPIPPLLTSTSG 263
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,744
Number of Sequences: 59808
Number of extensions: 386179
Number of successful extensions: 1363
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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