Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.47 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 144 EGWQVGPGSVHWQRARWQDPRHPWP--WQGRP 233
           E   V  GS++   A W+ PR  WP  W+ RP
Sbjct: 559 ESISVDSGSINTV-AEWEPPRALWPTEWKVRP 589



 Score = 24.2 bits (50), Expect = 0.82
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 107 TNINVQVSSHALSALAPGALITPTPFLPAESTSM 6
           TN+   +++   S ++      P   LPA STS+
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSI 866


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 433 CKKGVKIINVGRGGLIQETDFLQALKSGK 519
           CK+G  +   G G L    + L AL SGK
Sbjct: 387 CKEGPDVKAYGAGLLSAYGELLHALTSGK 415


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 104 WFWLATWSQLPL 139
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 293  TKGSNPMMFMPKAYILVATSRPTL 222
            TKGS P++     +I VAT+  TL
Sbjct: 1456 TKGSKPIIPEAARFIEVATNSITL 1479


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 104 WFWLATWSQLPL 139
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,236
Number of Sequences: 438
Number of extensions: 3430
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)