Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H10f
         (515 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FK5 Cluster: DNA-directed RNA polymerase subunit alp...    34   2.2  
UniRef50_A5CWS4 Cluster: N utilization substance protein B; n=2;...    33   2.9  
UniRef50_Q9GUB6 Cluster: Serpentine receptor, class h protein 89...    32   6.8  

>UniRef50_Q05FK5 Cluster: DNA-directed RNA polymerase subunit alpha;
           n=1; Candidatus Carsonella ruddii PV|Rep: DNA-directed
           RNA polymerase subunit alpha - Carsonella ruddii (strain
           PV)
          Length = 322

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +1

Query: 208 TVYKPNNIIMDVSGN*VY*CIIK*TNSL 291
           T++ PN II +VS N V+ CI+K  NSL
Sbjct: 121 TIFNPNKIIANVSNNIVFYCIMKCVNSL 148


>UniRef50_A5CWS4 Cluster: N utilization substance protein B; n=2;
           sulfur-oxidizing symbionts|Rep: N utilization substance
           protein B - Vesicomyosocius okutanii subsp. Calyptogena
           okutanii (strain HA)
          Length = 141

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +2

Query: 131 RRLKWRKFPLLYEFVHTGGHILSL*KQYINQI--ILSWMFLATKFINVL*NKRIVYDK 298
           +R + R    LY+++ +GG +  + +Q++NQ    +S +F +  FIN+L N R V D+
Sbjct: 8   QRTRERVIQALYQYLVSGGEVFQIEQQFLNQKQGKISKVFFSDLFINILEN-RFVLDE 64


>UniRef50_Q9GUB6 Cluster: Serpentine receptor, class h protein 89;
           n=1; Caenorhabditis elegans|Rep: Serpentine receptor,
           class h protein 89 - Caenorhabditis elegans
          Length = 343

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 279 LFYNTLINLVARNIHDNIIWFIYC-FYRLKICPPV*TNSYSNGNFLHF 139
           +F   +I L+  ++   I++FI C FY L + P + T+S +  N  HF
Sbjct: 210 MFMAIVIPLLVSSVMSQILFFIVCSFYYLYLAPSLLTSSQTRSNQKHF 257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,265,246
Number of Sequences: 1657284
Number of extensions: 8498801
Number of successful extensions: 14280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14279
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)