Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H10f
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    28   0.72 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   3.8  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    26   3.8  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   6.7  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   6.7  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   8.9  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.9  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   8.9  

>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 248 PETSMIILFGLYTVFIDLKYVHQCEQIHIVMETSSILI 135
           P  +  I + LY +   LK+VH    IH  ++ S+ILI
Sbjct: 112 PLETQFIQYFLYQILRGLKFVHSAGVIHRDLKPSNILI 149


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 255  LVARNIHDNIIWFIYCFYRLKICPPV*TNS 166
            L++R+  DNII    C+  L +  P+ TNS
Sbjct: 1048 LLSRDTGDNIIHVYKCYQHLYLFTPLETNS 1077


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/79 (21%), Positives = 37/79 (46%)
 Frame = -1

Query: 374 VVN*VAPSYAYTYYKNAASVEPVCAVYHKLFVYFIIH**T*LPETSMIILFGLYTVFIDL 195
           ++N V+P Y Y Y+      +P    ++   ++ +++    +      ILFG    F   
Sbjct: 62  IINLVSPIYEYLYWGGLEGKKP----HYPSGIHGLVNAAANIGNVFGQILFGFMGDFFGR 117

Query: 194 KYVHQCEQIHIVMETSSIL 138
           K+V+  E I +++ T  ++
Sbjct: 118 KFVYGKEMIVVIIATVLVI 136


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 2   KHFVKNAARLXXXXXXXXFNFVNST*SVYQSSLPVPSNLSFSN 130
           K  ++NA             ++NS  + + + +PVPSNLS SN
Sbjct: 165 KQLLQNADTDLSKLEKTCVQYMNSVQN-FPTDIPVPSNLSISN 206


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 172 CSHWWTYFKSIKTVYKP 222
           C+HW  YF ++  +Y P
Sbjct: 323 CAHWQEYFSALAFLYGP 339


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 227 LFGLYTVFIDLKYVHQCEQIHIVMETSSILI 135
           LF ++ +   LKY+H+   IH  ++  +ILI
Sbjct: 259 LFIMFQILQGLKYLHEQNIIHRDLKLENILI 289


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 288  FMINSADWFYRGCVFVV 338
            F  +S  W YRGCV  +
Sbjct: 965  FNSSSKSWLYRGCVITI 981


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 59  NFVNST*SVYQSSLPVPSNLSFSNRRLKWRKFP 157
           N+++S+ + YQ  L  P + SFSN    +   P
Sbjct: 146 NYIDSS-NTYQPQLSYPGSFSFSNNTQYFASLP 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,923
Number of Sequences: 5004
Number of extensions: 39962
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)