Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H10f
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine r...    32   0.21 
AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein89 protein.
          Length = 343

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 279 LFYNTLINLVARNIHDNIIWFIYC-FYRLKICPPV*TNSYSNGNFLHF 139
           +F   +I L+  ++   I++FI C FY L + P + T+S +  N  HF
Sbjct: 210 MFMAIVIPLLVSSVMSQILFFIVCSFYYLYLAPSLLTSSQTRSNQKHF 257


>AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical
           protein K07E8.5 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 356 PSYAYTYYKNAASVEPVCAVYHKLFVYFII 267
           P+ AY Y   A  V PV AV+    VYF +
Sbjct: 50  PTLAYLYVIGAPIVFPVAAVFQTSSVYFCV 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,855,894
Number of Sequences: 27780
Number of extensions: 216796
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)