Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H10f
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   1.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.3  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   10.0 

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 122 FSNRRLKWRK 151
           F NRR+KW+K
Sbjct: 56  FQNRRMKWKK 65


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 122 FSNRRLKWRK 151
           F NRR+KW+K
Sbjct: 56  FQNRRMKWKK 65


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 122 FSNRRLKWRK 151
           F NRR+KW+K
Sbjct: 318 FQNRRMKWKK 327


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 193 FKSIKTVYKPNNIIMDVSGN*VY*C 267
           ++  K +YK  N+   + GN V+ C
Sbjct: 784 YREAKQIYKVGNVQAYIDGNVVFVC 808


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 287 VYDKQRRLVLPRLRFCSRYMRKMGLP 364
           +YD+Q  LVL R+      M K   P
Sbjct: 283 LYDRQNGLVLSRMNLTLAKMEKTSKP 308


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 122 FSNRRLKWRK 151
           F NRR KW+K
Sbjct: 56  FQNRRTKWKK 65


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 171 NSYSNGNFLHFNLRL 127
           N+Y+N N+ ++N +L
Sbjct: 331 NNYNNNNYNNYNKKL 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,356
Number of Sequences: 438
Number of extensions: 2975
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)