Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H09f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   8.7  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   8.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   8.7  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 204 HNNNMFHR 227
           HNN M+HR
Sbjct: 41  HNNEMYHR 48


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 201 IHNNNMFHRKFLLSIFFFKHVRL 269
           +H   + H+KF  ++   +H+RL
Sbjct: 194 LHQCPVCHKKFTNALVLQQHIRL 216


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 204 HNNNMFHR 227
           HNN M+HR
Sbjct: 41  HNNEMYHR 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,439
Number of Sequences: 336
Number of extensions: 1867
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)