Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59091| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     27   7.1  
SB_40474| Best HMM Match : IF3_C (HMM E-Value=7.7)                     27   9.4  
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_59091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 126 IILRCERLLVRRLIHNYILL 185
           +ILRC   L+RRLIH  + L
Sbjct: 37  VILRCHERLIRRLIHYALFL 56


>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 398  HNNIRKVTLSLSLFVISPSQLPFVSPDHT 312
            + N+   + +LS  VI PS+LP  SP H+
Sbjct: 1233 YENVSMKSNTLSGLVIRPSELPLPSPTHS 1261


>SB_40474| Best HMM Match : IF3_C (HMM E-Value=7.7)
          Length = 146

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 359 FVISPSQLPFVSPDHTFRNGLVTLSP 282
           F I P + P VSP H  R+GL    P
Sbjct: 83  FDIPPEKKPSVSPQHAKRSGLQVYQP 108


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 359 FVISPSQLPFVSPDHTFRNGLVTLSP 282
           F I P + P VSP H  R+GL    P
Sbjct: 480 FDIPPEKKPSVSPQHAKRSGLQVYQP 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,890,255
Number of Sequences: 59808
Number of extensions: 198811
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)