Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29540.1 68414.m03613 hypothetical protein                          29   1.4  
At5g02920.1 68418.m00235 F-box family protein low similarity to ...    27   5.8  
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta...    27   7.7  

>At1g29540.1 68414.m03613 hypothetical protein
          Length = 161

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 72  IIFVKIKRPRTQS*TD*KIILRCERLLVR 158
           I+  K   P+ QS TD KI+ RC+ LL+R
Sbjct: 22  IMATKENPPKAQSNTDPKIMRRCKNLLIR 50


>At5g02920.1 68418.m00235 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 345

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 375 SLSF--SLRYISLSTSVRLARSHFS*RSC 295
           SL F  SL+Y+ LS S+RL R     RSC
Sbjct: 199 SLKFCESLKYLDLSKSLRLTRLEIERRSC 227


>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 598

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 282 WRERHKTVTKSVIGRDERKLRGRYNEERKRE 374
           WR++ K   KS  G  ER+ R +  +ERKR+
Sbjct: 38  WRKKQKERRKSDGGSYEREKRRKREKERKRK 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,066,999
Number of Sequences: 28952
Number of extensions: 145398
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)