Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    28   0.73 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   0.97 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   1.7  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   5.2  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   6.8  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +1

Query: 247 RLSKYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTESSL-----EQESDETPLMEDMIVQ 411
           ++++ +E  GH+   F+ +  TS  +  S  +R   S L     +   DE P++ED    
Sbjct: 614 KVNESIETNGHE--NFQKQALTSTGEQSSSNSRANPSKLFNISSDDSEDEVPIIEDTTAS 671

Query: 412 DD 417
           D+
Sbjct: 672 DE 673


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 391 MEDMIVQDDAGXXXXXXQNIKQKSSDEPNSKSNMEVDESD 510
           + D+ + D  G        +KQK++     K+NME DE+D
Sbjct: 193 LNDIHLFDTKGVDRRTQSELKQKANANNVEKANMEFDETD 232


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 23/72 (31%), Positives = 37/72 (51%)
 Frame = +1

Query: 175 VIDLRAELEKRNLDKSGVRGVLIQRLSKYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTE 354
           +I L   LEK  L K+GVR    ++ S  +E+      +F    TT  AK+ S  +   +
Sbjct: 52  IIYLEERLEKLKLRKNGVRKSNSEKPSVGIEKN----PSFS---TTKSAKSFSSTSSNID 104

Query: 355 SSLEQESDETPL 390
           S+L+  + +TPL
Sbjct: 105 SNLDLLNYDTPL 116


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 286 SDHVPPLPNTSTGVVS-EHHEHRSCLGYVSLIR 191
           SD +  L N+    V  EHH++RS  G+V L++
Sbjct: 228 SDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQ 260


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +1

Query: 265  EEEGHDPTTFKFELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAG 423
            ++EG D      E   SDA    +    +E   E  S+E    E  +  +++G
Sbjct: 937  DDEGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESG 989


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,229
Number of Sequences: 5004
Number of extensions: 34625
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)