Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315...    38   0.004
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809...    34   0.080
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376...    32   0.24 
06_03_1229 + 28571131-28571235,28572108-28572656,28572749-285729...    27   6.9  
08_01_0626 - 5445676-5446687,5447099-5447430                           27   9.1  
01_04_0144 - 16703232-16704049,16704148-16704331                       27   9.1  

>01_03_0232 +
           14030821-14030904,14031029-14031374,14031475-14031599,
           14031927-14032023,14032459-14032691,14032765-14032885,
           14033319-14033374,14033630-14033703,14034193-14034239,
           14034458-14034507,14034860-14034922,14035160-14035240,
           14035517-14035627,14035714-14035789,14036216-14036358,
           14036775-14036848,14037304-14037409,14037492-14037547,
           14038272-14038378,14041150-14041598
          Length = 832

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +1

Query: 169 LRVIDLRAELEKRNLDKSGVRGVLIQRLSKYLEEE 273
           LRV +LRAEL++R LD SG + VL++RL   + +E
Sbjct: 5   LRVEELRAELQRRGLDASGNKPVLVRRLDAAIRKE 39


>04_04_1188 +
           31579833-31579914,31580001-31580176,31580822-31580923,
           31581015-31581245,31581821-31581922,31582092-31582184,
           31582275-31582379,31582455-31582514,31582621-31582698,
           31582778-31582924,31583011-31583109,31583178-31583267,
           31583360-31583451,31583529-31583646,31583783-31583871,
           31583998-31584088,31584203-31584294,31584442-31584749,
           31584866-31584897
          Length = 728

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +1

Query: 265 EEEGHDPTTFKF-ELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXX 441
           EE G +P   K  + TTS    PS +  + E S + ESDE     D    +D        
Sbjct: 331 EESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDD-SSDESSDEDVKQKQTQA 389

Query: 442 QNIKQKSSDEPNSKSNMEVDESDKNS 519
           + ++   + E +S      ++SD  S
Sbjct: 390 KKVQAPVAQESSSSDESSEEDSDMES 415


>10_08_0497 -
           18336819-18337140,18337226-18337360,18337579-18337673,
           18337759-18337845,18337923-18338129,18338209-18338535,
           18338711-18338803,18338861-18339175,18339283-18339792,
           18339889-18339960,18341209-18341256,18341427-18341551,
           18341640-18341661
          Length = 785

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +1

Query: 265 EEEGHDPTTFKFELTTSD--AKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXX 438
           +++G D   F   L T     KTP +++++   + +  + E  ++ED+I+  D       
Sbjct: 658 QDDGEDTIAFSKNLLTEKKKTKTPKEKSKKRAHNHDDVATEEDIVEDLILSSD----EED 713

Query: 439 XQNIKQKSSDEPNSKSNMEVDESD 510
               K   SDE +    +E D  D
Sbjct: 714 EDEDKNMESDEDDGSMPVEDDSDD 737


>06_03_1229 +
           28571131-28571235,28572108-28572656,28572749-28572918,
           28573454-28573669,28573787-28573946
          Length = 399

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +1

Query: 328 PSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQNIKQKSSDEPNSKSNMEVDES 507
           P +  RR  S++E++ DE    E+  V+ D        ++  +   DE +SKS+ E+DE 
Sbjct: 113 PERVQRRAPSAVEEDEDEDE--EEEWVEVDPSEL----ESTSEMQVDEHSSKSDDEIDEF 166

Query: 508 DK 513
           ++
Sbjct: 167 EE 168


>08_01_0626 - 5445676-5446687,5447099-5447430
          Length = 447

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +1

Query: 352 ESSLEQESDETPLMEDMIVQD--DAGXXXXXXQNIKQKSSDEPNSKSNMEVDE---SDKN 516
           E   E+E ++  L ED  V D  D G      +  + +++D+ + +  ME DE    DKN
Sbjct: 203 EEEEEEEEEDEFLYEDENVDDDEDEGEEDEEIEEDEDENNDDDDEEEEMEEDEDLDEDKN 262


>01_04_0144 - 16703232-16704049,16704148-16704331
          Length = 333

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 88  HWVPTNKQHEIFSNFHFLLNFK 23
           +W  T K  EIF N H L+  K
Sbjct: 96  YWKATGKDKEIFRNHHMLIGMK 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,584
Number of Sequences: 37544
Number of extensions: 201764
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)