Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    33   0.15 
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr...    31   0.62 
At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    28   3.3  
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet...    27   5.8  
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a...    27   7.7  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    27   7.7  
At2g01275.1 68415.m00041 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At1g51390.1 68414.m05782 nitrogen fixation NifU-like family prot...    27   7.7  

>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/44 (29%), Positives = 29/44 (65%)
 Frame = +1

Query: 250 LSKYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTESSLEQESDE 381
           +SK +EE+  +  +F+FE++T D K   +R ++ +  LE+++ +
Sbjct: 454 ISKRIEEKEIERDSFEFEISTVDVKQTDEREKQVQVELERKTKQ 497


>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 384

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 22/90 (24%), Positives = 45/90 (50%)
 Frame = +1

Query: 244 QRLSKYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAG 423
           ++L +YL+    +P   +FE TT +  TP + +R ++    + +  TP  E ++ +  + 
Sbjct: 49  KQLEQYLKAHPGNPVISEFEWTTGE--TPRRSSRISQK--VKATTPTPDKEPLLKKRRSS 104

Query: 424 XXXXXXQNIKQKSSDEPNSKSNMEVDESDK 513
                 +   +K ++E   K NM+VD+  K
Sbjct: 105 LTKKDNKEAAEK-NEEAAVKENMDVDKDGK 133


>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 199 EKRNLDKSGVRGVLIQ--RLSKYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTESSLEQE 372
           E    D S +   L +  ++ ++LE EGH  TTF+    T  + + + + +   S+  Q 
Sbjct: 510 ENHECDSSSIDDTLEKCVKVIRWLEREGHIKTTFRVRFLTWFSMSSTAQEQSVVSTFVQT 569

Query: 373 SDETP 387
            ++ P
Sbjct: 570 LEDDP 574


>At5g27650.1 68418.m03313 PWWP domain-containing protein
           hypothetical protein F22F7.12 - Arabidopsis thaliana,
           EMBL:AC009606
          Length = 1072

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/67 (19%), Positives = 29/67 (43%)
 Frame = +1

Query: 310 TSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQNIKQKSSDEPNSKSN 489
           T+DA+         +  +  E ++    ED+++  D        +  ++  SD+ +S+  
Sbjct: 62  TNDARVLESERSEKDGVVGSEEEDEIKSEDVLIDKDDESSEVKEEEEEEDGSDDQSSELG 121

Query: 490 MEVDESD 510
            E DE +
Sbjct: 122 SEADEKE 128


>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
           alpha glucosidase II beta subunit from GI:2104691 [Mus
           musculus]
          Length = 647

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 295 KFELTTS-DAKTPSKRTRRTESSLEQESDETPLMEDMIVQ 411
           K E T+S D+ +P+  ++   S+ ++ESDE   +ED + +
Sbjct: 305 KEESTSSEDSSSPTDESQNDGSAEKEESDEVKKVEDFVTE 344


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
           domain-containing protein similar to eukaryotic protein
           synthesis initiation factor [Homo sapiens] GI:3941724;
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 1544

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/51 (19%), Positives = 26/51 (50%)
 Frame = +1

Query: 253 SKYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMI 405
           ++ + +EGH+P++ K ++       PS+  +   +++   S +TP     +
Sbjct: 37  NQLMRKEGHNPSSEKADIQVPHIAPPSQTQKSPITNIRMPSVQTPYQHTQV 87


>At2g01275.1 68415.m00041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger); contains PROSITE
           PS00190: Cytochrome c family heme-binding site signature
          Length = 259

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 314 EVVNSNLKVVGSCPSSSKYFDRRCI 240
           E ++SN++   SC  S KY  RRC+
Sbjct: 65  EDLDSNMETPCSCSGSVKYAHRRCV 89


>At1g51390.1 68414.m05782 nitrogen fixation NifU-like family protein
           simikar to HIRA-interacting protein 5 (NIFU FAMILY)
           (SP:Q9QZ23)  {Mus musculus}; contains Pfam profile:
           PF01106 NifU-like domain
          Length = 275

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +1

Query: 235 VLIQRLSKYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQD 414
           +LI R S ++    H P  F   +TT+ ++  S+ +    + +EQ    T  ++     +
Sbjct: 27  LLISRRSLFISAATHFPVNFSESITTNASRNCSRSSSFPFNWIEQR--RTMFIQTQSTPN 84

Query: 415 DAGXXXXXXQNIKQ-KSSDEPNSKSNM 492
            +       + + +  S+D PNS+S M
Sbjct: 85  PSSLMFSPGKPVMEIGSADFPNSRSAM 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,549,580
Number of Sequences: 28952
Number of extensions: 172850
Number of successful extensions: 521
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)