Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H07f
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    28   4.1  
07_03_1367 + 26072270-26072374,26074047-26074724                       27   7.2  

>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 124 LSHQCYKYIKTNIYRRSCTIFTINYTIYYV 35
           + H   +Y+   IY      FT+NY IYY+
Sbjct: 277 IDHVKLQYLCITIYHLLIACFTVNYFIYYL 306


>07_03_1367 + 26072270-26072374,26074047-26074724
          Length = 260

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +3

Query: 378 PIVSRITIH--WPSFYNVVTGKXW 443
           P  S  TIH  WPS+  ++ GK W
Sbjct: 51  PPPSHFTIHGLWPSYNKLIDGKMW 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,601,683
Number of Sequences: 37544
Number of extensions: 126365
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)