Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308H07f
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457740-10|CAM36340.1|  351|Caenorhabditis elegans Hypothetical...    27   4.9  
AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : short...    27   8.6  

>CU457740-10|CAM36340.1|  351|Caenorhabditis elegans Hypothetical
           protein C50E10.10 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 65  YSTASSVNISFYVLVTLMT**YRSITVTLT*ILVARNVKLIRDMSHFN 208
           YS   S+N +FY+++ L    +  I+  LT ILV +  K+I+   HF+
Sbjct: 17  YSLNGSLN-NFYLILAL----FELISYFLTAILVLKTCKIIQKSKHFH 59


>AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 9 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -1

Query: 449 GTPGFPSHDVVKRRPVNCNTTHYRANWVPGP 357
           G PG P     K  P N  T H+  N  P P
Sbjct: 251 GNPGLPGPQGPKGEPGNPGTCHHCQNRAPAP 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,837,732
Number of Sequences: 27780
Number of extensions: 130616
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)